.travis.yml

language: r
sudo: required

# R version
r: bioc-release

# Package caching only makes sense for the release versions.
cache: packages

# Packages from Bioconductor needed
#bioc_packages:
#   - BiocParallel
#   - GenomicRanges
#   - IRanges
#   - S4Vectors
#   - methods
#   - gridExtra
#   - BiocStyle
#   - BiocGenerics

# Be strict when checking package
warnings_are_errors: true

r_build_args: "--no-manual --no-resave-data --keep-empty-dirs"
r_check_args: "--no-build-vignettes --no-manual --timings"

# Package dependencies from CRAN not in DESCRIPTION file
r_binary_packages:
   - covr
#   - RUnit
#   - knitr
#   - rmarkdown
#   - ggplot2

#r_github_packages:
#   - Bioconductor-mirror/rtracklayer@release-3.3
#   - al2na/methylKit

# To send info to codecov
after_success:
  - Rscript -e 'library(covr);codecov()'