Have to be fixed before 2017.08 release

[tmozgach]

brew install fails:
(The list is based on the high priority list)

• delly (https://github.com/Homebrew/homebrew-science/pull/5412)
• discovardenovo (discovardenovo #19)
• gubbins (Homebrew/homebrew-science#5752)
• masurca (Homebrew/homebrew-science#5772)
• mira (mira: exp_flexer.cc #20)
• pbsuite (https://github.com/Homebrew/homebrew-science/pull/5685 + conflict, bedtools: because Both install bin/bamToFastq)
• poretools (poretools #21)

brew test fails:

• blasr blasr: revision for hdf5 https://github.com/Homebrew/homebrew-science/pull/5688

brew linkage --test fails:

• blasr Fix broken brew test #3
• lobstr https://github.com/Homebrew/homebrew-science/pull/5861
• openssl@1.1 Fix brew linkage --test openssl@1.1 #15

[tmozgach]

@sjackman Could you look at these problems and navigate how to fix them. May be we have to get rid off some of them, for example blasr?

[sjackman]

Let's first try updating blasr to the most recent version, 4.0.0.