--knownAminoAcidChangesFnp not reflecting under h_AATyped

[kevin-wamae]

Hi Nick, I included the following list of amino acid changes in my file of "Known Amino Acid Changes":

Gene TranscriptID AAPosition
k13 PF3D7_1343700.1 446
k13 PF3D7_1343700.1 458
k13 PF3D7_1343700.1 474
k13 PF3D7_1343700.1 476
k13 PF3D7_1343700.1 493
k13 PF3D7_1343700.1 539
k13 PF3D7_1343700.1 543
k13 PF3D7_1343700.1 553
k13 PF3D7_1343700.1 561
k13 PF3D7_1343700.1 578
k13 PF3D7_1343700.1 580

Below is the list of alleles extracted, however, those in bold above are missing in the "selectedClustersInfo" output
PF3D7_1343700.1=446-F:458-N:476-M:493-Y:539-R:543-I:553-P:561-R:580-C

I cannot figure out what the problem is.