cellmodeller-docker/Dockerfile_nvidia at master · avimanyu786/cellmodeller-docker · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
FROM ubuntu:20.04
ARG DEBIAN_FRONTEND=noninteractive
RUN apt-get update && apt-get -y upgrade \
  && apt-get install -y -qq --no-install-recommends \
    libglvnd0 \
    libgl1 \
    libglx0 \
    libegl1 \
    libxext6 \
    libx11-6 \
    mesa-utils \
    ocl-icd-libopencl1 \
    opencl-headers \
    clinfo \
    git \
    wget \
    g++ \
    libglib2.0.0 \
    libqt5x11extras5 \
    freeglut3-dev \
    ca-certificates \
    && rm -rf /var/lib/apt/lists/*

ENV PATH="/root/miniconda3/bin:${PATH}"
ARG PATH="/root/miniconda3/bin:${PATH}"
RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh; \
    mkdir /root/.conda; \
    bash Miniconda3-latest-Linux-x86_64.sh -b; \
    rm -f Miniconda3-latest-Linux-x86_64.sh; \
    echo "Successfully installed " conda --version; \
    conda init bash; \
    . /root/.bashrc; \
    conda create -n cellmodeller; \
    conda activate cellmodeller; \
    conda install python=3.8 pip; \
    pip install pyqt5;

WORKDIR /
RUN conda init bash; \
    . /root/.bashrc; \
    conda activate cellmodeller; \
    git clone https://github.com/HaseloffLab/CellModeller.git; \
    cd CellModeller && pip install -e .;

RUN echo 'conda activate cellmodeller \n\
python /CellModeller/Scripts/CellModellerGUI.py \n\
alias cmgui="python /CellModeller/Scripts/CellModellerGUI.py"' >> /root/.bashrc

RUN mkdir -p /etc/OpenCL/vendors && \
    echo "libnvidia-opencl.so.1" > /etc/OpenCL/vendors/nvidia.icd
RUN ln -s /usr/lib/x86_64-linux-gnu/libOpenCL.so.1 /usr/lib/libOpenCL.so
ENV NVIDIA_VISIBLE_DEVICES all
ENV NVIDIA_DRIVER_CAPABILITIES graphics,utility,compute