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<!DOCTYPE html>
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<head>
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<title>TACTICS.thompson_sampling.strategies.base_strategy &#8212; TACTICS documentation</title>
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<h1>Source code for TACTICS.thompson_sampling.strategies.base_strategy</h1><div class="highlight"><pre>
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<span></span><span class="kn">from</span><span class="w"> </span><span class="nn">abc</span><span class="w"> </span><span class="kn">import</span> <span class="n">ABC</span><span class="p">,</span> <span class="n">abstractmethod</span>
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<span class="kn">from</span><span class="w"> </span><span class="nn">typing</span><span class="w"> </span><span class="kn">import</span> <span class="n">List</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">,</span> <span class="n">Optional</span>
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<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
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<div class="viewcode-block" id="SelectionStrategy">
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<a class="viewcode-back" href="../../../../thompson_sampling.html#TACTICS.thompson_sampling.strategies.base_strategy.SelectionStrategy">[docs]</a>
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<span class="k">class</span><span class="w"> </span><span class="nc">SelectionStrategy</span><span class="p">(</span><span class="n">ABC</span><span class="p">):</span>
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<span class="w"> </span><span class="sd">&quot;&quot;&quot;Abstract base class for reagent selection strategies&quot;&quot;&quot;</span>
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<div class="viewcode-block" id="SelectionStrategy.__init__">
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<a class="viewcode-back" href="../../../../thompson_sampling.html#TACTICS.thompson_sampling.strategies.base_strategy.SelectionStrategy.__init__">[docs]</a>
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<span class="k">def</span><span class="w"> </span><span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mode</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;maximize&quot;</span><span class="p">):</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">mode</span> <span class="o">=</span> <span class="n">mode</span></div>
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<div class="viewcode-block" id="SelectionStrategy.select_reagent">
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<a class="viewcode-back" href="../../../../thompson_sampling.html#TACTICS.thompson_sampling.strategies.base_strategy.SelectionStrategy.select_reagent">[docs]</a>
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<span class="nd">@abstractmethod</span>
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<span class="k">def</span><span class="w"> </span><span class="nf">select_reagent</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
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<span class="n">reagent_list</span><span class="p">:</span> <span class="n">List</span><span class="p">,</span>
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<span class="n">disallow_mask</span><span class="p">:</span> <span class="nb">set</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
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<span class="o">**</span><span class="n">kwargs</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">int</span><span class="p">:</span>
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<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
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<span class="sd"> Select a reagent index from the list</span>
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<span class="sd"> Parameters:</span>
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<span class="sd"> -----------</span>
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<span class="sd"> reagent_list : List</span>
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<span class="sd"> List of reagent objects with posterior distributions</span>
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<span class="sd"> disallow_mask : set</span>
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<span class="sd"> Indices to exclude from selection</span>
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<span class="sd"> **kwargs : dict</span>
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<span class="sd"> Strategy-specific parameters</span>
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<span class="sd"> Returns:</span>
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<span class="sd"> --------</span>
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<span class="sd"> int : Selected reagent index</span>
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<span class="sd"> &quot;&quot;&quot;</span>
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<span class="k">pass</span></div>
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<div class="viewcode-block" id="SelectionStrategy.select_batch">
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<a class="viewcode-back" href="../../../../thompson_sampling.html#TACTICS.thompson_sampling.strategies.base_strategy.SelectionStrategy.select_batch">[docs]</a>
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<span class="k">def</span><span class="w"> </span><span class="nf">select_batch</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
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<span class="n">reagent_list</span><span class="p">:</span> <span class="n">List</span><span class="p">,</span>
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<span class="n">batch_size</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
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<span class="n">disallow_mask</span><span class="p">:</span> <span class="nb">set</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
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<span class="o">**</span><span class="n">kwargs</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
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<span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
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<span class="sd"> Select multiple reagent indices from the list (batch selection)</span>
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<span class="sd"> Default implementation: call select_reagent multiple times.</span>
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<span class="sd"> Strategies can override this for more efficient batch selection.</span>
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<span class="sd"> Parameters:</span>
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<span class="sd"> -----------</span>
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<span class="sd"> reagent_list : List</span>
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<span class="sd"> List of reagent objects with posterior distributions</span>
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<span class="sd"> batch_size : int</span>
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<span class="sd"> Number of reagents to select</span>
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<span class="sd"> disallow_mask : set</span>
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<span class="sd"> Indices to exclude from selection</span>
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<span class="sd"> **kwargs : dict</span>
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<span class="sd"> Strategy-specific parameters</span>
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<span class="sd"> Returns:</span>
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<span class="sd"> --------</span>
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<span class="sd"> np.ndarray : Array of selected reagent indices</span>
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<span class="sd"> &quot;&quot;&quot;</span>
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<span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">select_reagent</span><span class="p">(</span><span class="n">reagent_list</span><span class="p">,</span> <span class="n">disallow_mask</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
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<span class="k">for</span> <span class="n">_</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">batch_size</span><span class="p">)</span>
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<span class="p">])</span></div>
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<div class="viewcode-block" id="SelectionStrategy.prepare_scores">
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<a class="viewcode-back" href="../../../../thompson_sampling.html#TACTICS.thompson_sampling.strategies.base_strategy.SelectionStrategy.prepare_scores">[docs]</a>
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<span class="k">def</span><span class="w"> </span><span class="nf">prepare_scores</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reagent_list</span><span class="p">:</span> <span class="n">List</span><span class="p">,</span> <span class="n">rng</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">Generator</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">:</span>
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<span class="w"> </span><span class="sd">&quot;&quot;&quot;Sample scores from posterior distributions&quot;&quot;&quot;</span>
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<span class="n">stds</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">r</span><span class="o">.</span><span class="n">std</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">reagent_list</span><span class="p">])</span>
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<span class="n">mu</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">r</span><span class="o">.</span><span class="n">mean</span> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="n">reagent_list</span><span class="p">])</span>
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<span class="k">return</span> <span class="n">rng</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="n">size</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="n">reagent_list</span><span class="p">))</span> <span class="o">*</span> <span class="n">stds</span> <span class="o">+</span> <span class="n">mu</span></div>
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</div>
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</pre></div>
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