Fix slice ordering and add new test data (#67) #163
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| --- | |
| # used for running tests | |
| name: tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request_target: | |
| branches: [main] | |
| jobs: | |
| pre_commit_checks: | |
| # use macos to run pre-commit checks to avoid | |
| # challenges with linux headless display and | |
| # code coverage related to printed stdout. | |
| runs-on: macos-14 | |
| env: | |
| SYNAPSE_AUTH_TOKEN: ${{ secrets.SYNAPSE_AUTH_TOKEN }} | |
| steps: | |
| # checks out the repo | |
| - uses: actions/checkout@v5 | |
| with: | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| # add the fork upstream for the remote | |
| - name: Add fork remote | |
| # yamllint disable rule:line-length | |
| run: | | |
| git remote add upstream https://github.com/${{ github.event.pull_request.head.repo.full_name }}.git | |
| # yamllint enable rule:line-length | |
| # run pre-commit | |
| - name: Python setup | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.11" | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v7 | |
| - name: Display configuration for Ubuntu | |
| uses: pyvista/setup-headless-display-action@v4 | |
| with: | |
| qt: true | |
| - uses: pre-commit/action@v3.0.1 | |
| id: pre_commit | |
| # run pre-commit ci lite for automated fixes | |
| - uses: pre-commit-ci/lite-action@v1.1.0 | |
| if: ${{ !cancelled() && steps.pre_commit.outcome == 'failure' }} | |
| run_tests: | |
| strategy: | |
| matrix: | |
| python_version: ["3.11", "3.12"] | |
| os: [ubuntu-24.04, macos-14] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| OS: ${{ matrix.os }} | |
| SYNAPSE_AUTH_TOKEN: ${{ secrets.SYNAPSE_AUTH_TOKEN }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| with: | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - name: Python setup | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| - name: Display configuration for Ubuntu | |
| if: ${{ matrix.os == 'ubuntu-24.04' }} | |
| uses: pyvista/setup-headless-display-action@v4 | |
| with: | |
| qt: true | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v7 | |
| - name: Run pytest | |
| run: uv run --frozen pytest |