alphafold.md

Playbook AlphaFold

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Summary

Installs the Alphabet DeepMind AlphaFold inference pipeline for protein folding.

Note: the user has to acquire model parameters themselves, and place them on the workspace. See the user manual

Requirements

• Ubuntu workspace
• SURF Docker Environment component installed

Description

• Gets the alphafold3 source
• Builds the docker image from that source
• Ensure the right directories for input, output, public databases, and model parameters exist.
• Places a convenience script run_alphafold to assist the user

See also

alphafold role

History

2024-2025 Written by Almed Hamzah and Dawa Ometto (Utrecht University).

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