chore: add ruff configuration and fix remaining linting issues #14

	name: CI

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10", "3.11"]

	steps:
	- uses: actions/checkout@v3

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install Poetry
	uses: snok/install-poetry@v1
	with:
	version: 1.5.1
	virtualenvs-create: true
	virtualenvs-in-project: true

	- name: Load cached venv
	id: cached-poetry-dependencies
	uses: actions/cache@v3
	with:
	path: .venv
	key: venv-${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }}

	- name: Install dependencies
	if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
	run: poetry install --no-interaction --no-root

	- name: Install project
	run: poetry install --no-interaction

	- name: Run black
	run: poetry run black --check morphml tests

	- name: Run ruff
	run: poetry run ruff morphml tests

	- name: Run mypy
	run: poetry run mypy morphml

	- name: Run tests with coverage
	run: poetry run pytest --cov=morphml --cov-report=xml --cov-report=term-missing

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	file: ./coverage.xml
	flags: unittests
	name: codecov-umbrella
	fail_ci_if_error: false

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