Merge pull request #8 from SeqWare/feature/docker_automated_build

Feature/docker automated build

Author: denis-yuen

roles/grid-engine/tasks/master.yml

@@ -9,6 +9,7 @@
 
 - name: SGE | Template act_qmaster
   template: src=act_qmaster.j2 dest=/var/lib/gridengine/default/common/act_qmaster
+  when: docker is not defined
 
 - name: SGE | Ensure gridengine-master started 
   service: name=gridengine-master state=started
@@ -17,14 +18,17 @@
   command: qconf -as {{ inventory_hostname }}
   register: configure_master_as
   changed_when: not 'already exists' in configure_master_as.stderr
+  when: docker is not defined
 
 - name: SGE | Make a directory for our SGE templates
   file: state=directory path=/etc/gridengine/templates mode=0744
+  when: docker is not defined
 
 # setup memory as a consumable resource
 - name: SGE | Template memory configuration file
   template: src=sc.j2 dest=/etc/gridengine/templates/sge_sc
   register: memory_template
+  when: docker is not defined
 
 - name: SGE | Setup memory as consumable resource
   command: qconf -Mc /etc/gridengine/templates/sge_sc
@@ -38,30 +42,31 @@
   shell: qconf -su users | grep -E "^entries" | cut -f2 -d " "
   register: sge_current_users
   changed_when: false
+  when: docker is not defined
 
 - name: SGE | Add the capsid user
   command: qconf -au capsid users
-  when: not 'capsid' in sge_current_users.stdout.split(',')
+  when: docker is not defined and not 'capsid' in sge_current_users.stdout.split(',') 
 
 # loop through and template worker hosts
 - name: SGE | Generate execution host templates
   template: src=execution_host.j2 dest=/etc/gridengine/templates/sge_execution_host_{{ item }}.sh mode=0555
-  when: not single_node
+  when: not single_node and docker is not defined
   with_items: groups.worker
   register: execution_host_template
 
 # loop through and setup worker hosts, if this was better it would modify existing hosts as well instead of ignoring errors
 - name: SGE | Add worker hosts as execution hosts
   shell: export EDITOR=/etc/gridengine/templates/sge_execution_host_{{ item }}.sh && qconf -ae ; qconf -me {{ item }}
   with_items: groups.worker
-  when: execution_host_template.changed 
+  when: execution_host_template.changed
   ignore_errors: yes
 
   # add the master as an execution host if we only have one node
 - name: SGE | Single node execution host templates
   template: src=execution_selfhost.j2 dest=/etc/gridengine/templates/sge_execution_host_master.sh mode=0555
   register: execution_host_template
-  when: single_node
+  when: single_node and docker is not defined
 
 - name: SGE | Single node host as execution host
   shell: export EDITOR=/etc/gridengine/templates/sge_execution_host_master.sh && qconf -ae ; qconf -me master
@@ -74,35 +79,39 @@
   ignore_errors: yes
   register: sge_current_host_groups
   changed_when: false
+  when: docker is not defined
 
 # The template now handles the hostlist properly
 - name: SGE | Template host group configuration
   template: src=ahgrp.j2 dest=/etc/gridengine/templates/sge_ahgrp
-  when: not '@allhosts' in sge_current_host_groups.stdout_lines
+  when: docker is not defined and not '@allhosts' in sge_current_host_groups.stdout_lines 
 
 - name: SGE | Add the host group configuration
   command: qconf -Ahgrp /etc/gridengine/templates/sge_ahgrp
-  when: not '@allhosts' in sge_current_host_groups.stdout_lines
+  when: docker is not defined and not '@allhosts' in sge_current_host_groups.stdout_lines
 
 # Again, we don't want to do this if it already exists
 - name: SGE | Check current queues
   command: qconf -sql
   ignore_errors: yes
   register: sge_current_queues
   changed_when: false
+  when: docker is not defined
 
 # template handles hostlist, worker queue slots, target load average
 - name: SGE | Template main queue
   template: src=aq.j2 dest=/etc/gridengine/templates/sge_aq
   register: main_queue_template
+  when: docker is not defined
 
 - name: SGE | Add main queue
   command: qconf -Aq /etc/gridengine/templates/sge_aq
-  when: not 'main.q' in sge_current_queues.stdout_lines
+  when: docker is not defined and not 'main.q' in sge_current_queues.stdout_lines
 
 - name: SGE | Template modify queue
   template: src=mq.j2 dest=/etc/gridengine/templates/sge_mq.sh mode=0555
   register: modify_main_queue_template
+  when: docker is not defined
 
 - name: SGE | Modify main queue
   shell: export EDITOR=/etc/gridengine/templates/sge_mq.sh && qconf -mq main.q 
@@ -111,20 +120,21 @@
 - name: SGE | Check parallel environment status
   command: qconf -sp serial
   ignore_errors: yes
-  when: grid_engine_master == True
+  when: grid_engine_master == True and docker is not defined
   register: sge_parallel_env
   changed_when: false  
 
 - name: SGE | Template serial parallel environment file
   template: src=serial_profile.j2 dest=/etc/gridengine/templates/sge_serial_profile
   register: serial_profile
+  when: docker is not defined
 
 # Again, if this was better, we would re-create the environment if there were changes in the template
 - name: SGE | Setup serial profile environment
   command: "{{ item }}"
   with_items:
       - qconf -Ap /etc/gridengine/templates/sge_serial_profile
       - qconf -aattr queue pe_list serial main.q
-  when:  "'serial is not a parallel environment' in sge_parallel_env.stderr or serial_profile.changed"
+  when:  "docker is not defined and 'serial is not a parallel environment' in sge_parallel_env.stderr or docker is not defined and serial_profile.changed"
 
 # TODO: bindle 1.2.1 re-runs the sge setup script on reboot. Determine whether this is really needed

roles/seqware-master-infrastructure/tasks/main.yml

@@ -297,6 +297,14 @@
 - name:  NFS Restart
   service: name=rpcbind state=restarted
   when: nfs_setup.changed
+  ignore_errors: yes
+  when: ansible_distribution == 'Ubuntu' and ansible_distribution_release == 'trusty'
+
+- name:  NFS Restart
+  service: name=portmap state=restarted
+  when: nfs_setup.changed
+  ignore_errors: yes
+  when: ansible_distribution == 'Ubuntu' and ansible_distribution_release == 'precise'
 
 - name:  NFS Restart
   service: name=nfs-kernel-server state=restarted