This pipeline has been successfully used on the Hebbe cluster in Gothenburg, though it hasn't had as much testing as some of the other profiles.
To use, run the pipeline with -profile hebbe --project [project-id]. This will launch the hebbe config which has been pre-configured with a setup suitable for the Hebbe cluster. It will download a singularity image with all of the required software - see the c3se Singularity documentation for more details.
If running regularly, we recommend creating a config file with paths to your reference genome indices (see reference-genomes.md for instructions).