f restart tsts

Author: alongd

functional/restart_test.py

@@ -35,9 +35,9 @@ def test_restart_thermo(self):
         Rather than through ARC.py. Check that all files are in place and the log file content.
         """
         restart_path = os.path.join(ARC_PATH, 'arc', 'testing', 'restart', '1_restart_thermo', 'restart.yml')
-        input_dict = read_yaml_file(path=restart_path)
         project = 'arc_project_for_testing_delete_after_usage_restart_thermo'
         project_directory = os.path.join(ARC_PATH, 'Projects', project)
+        input_dict = read_yaml_file(path=restart_path, project_directory=project_directory)
         input_dict['project'], input_dict['project_directory'] = project, project_directory
         arc1 = ARC(**input_dict)
         arc1.execute()
@@ -129,9 +129,9 @@ def test_restart_thermo(self):
     def test_restart_rate_1(self):
         """Test restarting ARC and attaining a reaction rate coefficient"""
         restart_path = os.path.join(ARC_PATH, 'arc', 'testing', 'restart', '2_restart_rate', 'restart.yml')
-        input_dict = read_yaml_file(path=restart_path)
         project = 'arc_project_for_testing_delete_after_usage_restart_rate_1'
         project_directory = os.path.join(ARC_PATH, 'Projects', project)
+        input_dict = read_yaml_file(path=restart_path, project_directory=project_directory)
         input_dict['project'], input_dict['project_directory'] = project, project_directory
         arc1 = ARC(**input_dict)
         arc1.execute()
@@ -176,11 +176,12 @@ def test_restart_rate_2(self):
     def test_restart_bde(self):
         """Test restarting ARC and attaining reaction a rate coefficient"""
         restart_path = os.path.join(ARC_PATH, 'arc', 'testing', 'restart', '3_restart_bde', 'restart.yml')
-        input_dict = read_yaml_file(path=restart_path)
+        project_directory = os.path.join(ARC_PATH, 'Projects', 'test_restart_bde')
+        input_dict = read_yaml_file(path=restart_path, project_directory=project_directory)
         arc1 = ARC(**input_dict)
         arc1.execute()
 
-        report_path = os.path.join(ARC_PATH, 'Projects', 'test_restart_bde', 'output', 'BDE_report.txt')
+        report_path = os.path.join(project_directory, 'output', 'BDE_report.txt')
         with open(report_path, 'r') as f:
             lines = f.readlines()
         self.assertIn(' BDE report for anilino_radical:\n', lines)