Flexibilise Node definitions #154
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # some boiler plate generated by chat gpt | |
| name: CI Workflow for Snakemake and pytest | |
| on: | |
| push: | |
| branches: | |
| - main # Trigger the workflow when pushing to the main branch | |
| - py-tests # when pushing to py-tests branch for dev | |
| pull_request: | |
| branches: | |
| - main # Trigger on pull requests to main branch | |
| jobs: | |
| run-tests: | |
| runs-on: ubuntu-latest # Set the environment to Ubuntu | |
| steps: | |
| # Step 1: Checkout the repository code | |
| - uses: actions/checkout@v4 | |
| # Step 2: Set up Conda | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: 'latest' # Use the latest version of Miniconda | |
| environment-file: workflow/envs/environment.yaml # Point to your conda environment file (if exists) | |
| auto-activate-base: false | |
| activate-environment: pypsa-china | |
| # /3 cache the Conda environment (for faster CI) | |
| - name: Cache Conda environment | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/miniconda3 | |
| key: ${{ runner.os }}-conda-${{ hashFiles('workflow/envs/environment.yaml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-conda- | |
| # 4/ Run tests using pytest | |
| - name: Run pytest | |
| shell: bash -el {0} | |
| run: | | |
| conda install pytest | |
| pytest -v -s # Run pytest (make sure your tests are discovered and run) | |