Name	Name	Last commit message	Last commit date
parent directory ..
01_Lab_journal.ipynb	01_Lab_journal.ipynb
QC_pipeline	QC_pipeline
README.md	README.md
kraken2_pipeline	kraken2_pipeline
qc_n_tax_id.yaml	qc_n_tax_id.yaml

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Bat Shotgun Metagenomic Flow-work

This is the repository for supplementary materials for the upcoming publication

Quality Control 💎 and Taxonomic Identification 🪪

Files:

📑 01_Lab_journal.ipynb - laboratory journal with commands to reproduce pipeline
⚙️ QC_pipeline - snakemake pipeline to run fastqc & multiqc
⚙️ kraken2_pipeline - snakemake pipeline to run kraken2 against PlusPF database
📑 qc_n_tax_id.yaml - conda environment

Instruction:

conda env create -f qc_n_tax_id.yaml

This part of work was done on DSTU's server