POL5885 3D first-order compatibility tests versus pyRadiomics #980
Workflow file for this run
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| name: Build Wheels | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: true | |
| env: | |
| MACOSX_DEPLOYMENT_TARGET: "10.15" | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, windows-latest, macos-15-intel, ubuntu-22.04-arm] | |
| cibw_archs: ["auto64"] | |
| cibw_build: ["cp310", "cp311", "cp312", "cp313"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| name: Check out | |
| with: | |
| submodules: recursive | |
| - uses: ilammy/msvc-dev-cmd@v1 | |
| name: Add MSVS Path | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: '3.11' | |
| - name: Install cibuildwheel | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install cibuildwheel==3.0.0 delvewheel wheel | |
| - name: Building wheels | |
| run: | | |
| python -m cibuildwheel --output-dir dist | |
| env: | |
| CIBW_BUILD: ${{ matrix.cibw_build }}-* | |
| CIBW_SKIP: "*musllinux*" | |
| CIBW_BUILD_VERBOSITY: 3 | |
| CIBW_MANYLINUX_X86_64_IMAGE: quay.io/pypa/manylinux_2_28_x86_64:latest | |
| CIBW_MANYLINUX_AARCH64_IMAGE: quay.io/pypa/manylinux_2_28_aarch64:latest | |
| CIBW_BEFORE_ALL_MACOS: | | |
| bash ci-utils/install_prereq_linux.sh --build_arrow yes && | |
| mkdir -p /tmp/nyxus_bld && | |
| cp -r local_install /tmp/nyxus_bld | |
| CIBW_BEFORE_ALL_LINUX: dnf -y install llvm libevent-devel openssl-devel && | |
| bash ci-utils/install_prereq_linux.sh --build_arrow yes && | |
| mkdir -p /tmp/nyxus_bld && | |
| cp -r local_install /tmp/nyxus_bld | |
| CIBW_BEFORE_ALL_WINDOWS: ci-utils\install_prereq_win.bat && | |
| xcopy /E /I /y local_install C:\TEMP\nyxus_bld\local_install | |
| CIBW_ENVIRONMENT_MACOS: > | |
| MACOSX_DEPLOYMENT_TARGET=10.15 | |
| SDKROOT="$(xcrun --sdk macosx --show-sdk-path)" | |
| CMAKE_OSX_SYSROOT="$SDKROOT" | |
| CC="$(xcrun -f clang)" | |
| CXX="$(xcrun -f clang++)" | |
| CMAKE_C_COMPILER="$CC" | |
| CMAKE_CXX_COMPILER="$CXX" | |
| CXXFLAGS="-isysroot $SDKROOT -stdlib=libc++ -mmacosx-version-min=$MACOSX_DEPLOYMENT_TARGET" | |
| LDFLAGS="-isysroot $SDKROOT -lc++ -lc++abi -mmacosx-version-min=$MACOSX_DEPLOYMENT_TARGET" | |
| ARROW_HAVE_LIBATOMIC=OFF | |
| REPAIR_LIBRARY_PATH="/tmp/nyxus_bld/local_install/lib:/tmp/nyxus_bld/local_install/lib64" | |
| NYXUS_DEP_DIR="/tmp/nyxus_bld/local_install" | |
| CIBW_ENVIRONMENT_LINUX: LD_LIBRARY_PATH="/tmp/nyxus_bld/local_install/lib:/tmp/nyxus_bld/local_install/lib64:$LD_LIBRARY_PATH" NYXUS_DEP_DIR="/tmp/nyxus_bld/local_install" | |
| CIBW_ENVIRONMENT_WINDOWS: PATH="C:\\TEMP\\nyxus_bld\\local_install\\bin;$PATH" NYXUS_DEP_DIR="C:\\TEMP\\nyxus_bld\\local_install" | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: | | |
| DYLD_LIBRARY_PATH=$REPAIR_LIBRARY_PATH delocate-listdeps {wheel} && | |
| MACOSX_DEPLOYMENT_TARGET=10.15 DYLD_LIBRARY_PATH=$REPAIR_LIBRARY_PATH delocate-wheel \ | |
| --require-archs {delocate_archs} \ | |
| --require-target-macos-version $MACOSX_DEPLOYMENT_TARGET \ | |
| -w {dest_dir} {wheel} \ | |
| -e libssl -e libzstd -e libcrypto -e libwebp -e libsharpyuv | |
| CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: "delvewheel repair -w {dest_dir} {wheel}" | |
| CIBW_ARCHS: ${{ matrix.cibw_archs }} | |
| CIBW_TEST_REQUIRES: numpy pandas pyarrow pytest bfio | |
| CIBW_TEST_COMMAND: pytest -vv {project}/tests/python | |
| - name: Upload Artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: nyxus-wheels-${{ matrix.os }}-${{ matrix.cibw_archs }}-${{ matrix.cibw_build }} | |
| path: dist/*.whl | |
| retention-days: 1 | |
| build_wheels_apple_arm64: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: true | |
| env: | |
| MACOSX_DEPLOYMENT_TARGET: "11.0" | |
| strategy: | |
| matrix: | |
| os: [macos-14] | |
| cibw_archs: ["arm64"] | |
| cibw_build: ["cp310", "cp311", "cp312", "cp313"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| name: Check out | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: '3.11' | |
| - name: Install cibuildwheel | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install cibuildwheel==3.0.0 delvewheel wheel | |
| - name: Building wheels | |
| run: | | |
| python -m cibuildwheel --output-dir dist | |
| env: | |
| CIBW_BUILD: ${{ matrix.cibw_build }}-* | |
| CIBW_BUILD_VERBOSITY: 3 | |
| CIBW_ARCHS_MACOS: arm64 | |
| CIBW_BEFORE_ALL_MACOS: | | |
| bash ci-utils/install_prereq_linux.sh --build_arrow yes || true | |
| mkdir -p /tmp/nyxus_bld && cp -r local_install /tmp/nyxus_bld || true | |
| CIBW_ENVIRONMENT_MACOS: > | |
| MACOSX_DEPLOYMENT_TARGET=11.0 | |
| SDKROOT="$(xcrun --sdk macosx --show-sdk-path)" | |
| CMAKE_OSX_SYSROOT="$SDKROOT" | |
| CC="clang" CXX="clang++" | |
| CMAKE_C_COMPILER="$CC" CMAKE_CXX_COMPILER="$CXX" | |
| CXXFLAGS="-isysroot $SDKROOT -stdlib=libc++" | |
| LDFLAGS="-isysroot $SDKROOT -lc++ -lc++abi" | |
| REPAIR_LIBRARY_PATH="/tmp/nyxus_bld/local_install/lib:/tmp/nyxus_bld/local_install/lib64" | |
| NYXUS_DEP_DIR="/tmp/nyxus_bld/local_install" | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: | | |
| DYLD_LIBRARY_PATH=$REPAIR_LIBRARY_PATH delocate-listdeps {wheel} && | |
| MACOSX_DEPLOYMENT_TARGET=11.0 DYLD_LIBRARY_PATH=$REPAIR_LIBRARY_PATH delocate-wheel \ | |
| --require-archs {delocate_archs} \ | |
| --require-target-macos-version $MACOSX_DEPLOYMENT_TARGET \ | |
| -w {dest_dir} {wheel} \ | |
| -e libssl -e libzstd -e libcrypto | |
| CIBW_ARCHS: ${{ matrix.cibw_archs }} | |
| CIBW_TEST_REQUIRES: numpy pandas pyarrow pytest bfio | |
| CIBW_TEST_COMMAND: pytest -vv {project}/tests/python | |
| - name: Upload Artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: nyxus-wheels-apple-arm64-${{ matrix.os }}-${{ matrix.cibw_archs }}-${{ matrix.cibw_build }} | |
| path: dist/*.whl | |
| retention-days: 1 |