preparing CRAN submission

Author: jchiquet

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: PLNmodels
 Title: Poisson Lognormal Models
-Version: 1.2.2
+Version: 1.2.1
 Authors@R: c(
     person("Julien", "Chiquet", , "julien.chiquet@inrae.fr", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-3629-3429")),

NEWS.md

@@ -1,5 +1,7 @@
-# Current version
+# PLNmodels 1.2.1 (2025-03-10)
 
+* fix NOTES in CRAN due to missing packages in \link{} (PR #142)
+* Now requires R >= 4.1.0 because package code uses the pipe |>  (PR #142)
 * fix sandwich variance estimation (PR #140)
 * fix use of native pipe to ensure compatibility with R 3.6 (merge PR #125, fix #124)
 

cran-comments.md

@@ -1,43 +1,50 @@
 
-Submitting PLNmodels version 1.2.0 to CRAN
+Submitting PLNmodels version 1.2.1 to CRAN (CRAN request)
 
-new feature: ZIPLN (PLN with zero inflation) for standard PLN and PLN Network
+Most of the problems on https://cran.r-project.org/web/checks/check_results_PLNmodels.html are due to external (yet important) packages (nloptr essentially).
+
+PLNmodels is scheduled for archiving today, March 10. Although noptr is due for submission soon, the corrections have not yet been made on CRAN: while archiving is not required for nloptr, it is required for the pckages that depend on it (including PLNmodels).
+
+We corrected the couple of NOTES imputed to PLNmodels, hoping to avoid the archival of our package.
 
 ## Tested environments
 
-* tested locally on Ubuntu Linux 22.04.3 LTS, R-release, GCC
+* tested locally on Ubuntu Linux 24.04.2 LTS, R-release, GCC
 
 * tested remotely with win-builder 
+  - Windows Server 2022, R 4.3.3, 64 bit
+  - Windows Server 2022, R 4.4.3, 64 bit
   - Windows Server 2022, R-devel, 64 bit
-  - Windows Server 2022, R-release, 64 bit
-  - Windows Server 2022, R-old, 64 bit
 
 * tested remotely with github-action
-  - Linux Ubuntu 22.04, R-release
-  - Linux Ubuntu 22.04, R-devel 
+  - Linux Ubuntu 24.04, R-release
+  - Linux Ubuntu 24.04, R-devel 
   - Windows Server 2022, R-release, 64 bit
   - Windows Server 2022, R-oldrel , 64 bit
-  - macOS Big Sur 11, R-release 
-  - macOS Big Sur 11, R-oldrel 
+  - macOS Sonoma 14, R-release 
+  - macOS Sonoma 14, R-oldrel 
 
-all status OK except for
+all status OK except for 2 NOTES
 
 * the usual NOTE about libs size (RcppArmadillo)
+* a note about the number of dependencies
+
+── R CMD check results ────────────────────────────── PLNmodels 1.2.1 ────
+Duration: 6m 30.2s
 
- R CMD check results  PLNmod
-Duration: 6m 27.6s
+❯ checking package dependencies ... NOTE
+  Imports includes 21 non-default packages.
+  Importing from so many packages makes the package vulnerable to any of
+  them becoming unavailable.  Move as many as possible to Suggests and
+  use conditionally.
 
 ❯ checking installed package size ... NOTE
-    installed size is 23.4Mb
+    installed size is 15.2Mb
     sub-directories of 1Mb or more:
       data   1.4Mb
-      doc    2.1Mb
-      libs  18.3Mb
+      doc    2.3Mb
+      libs   9.8Mb
 
-0 errors ✔ | 0 warnings ✔ | 1 note ✖
+0 errors ✔ | 0 warnings ✔ | 2 notes ✖
 
 R CMD check succeeded
-
-── R CMD check results ─────────────────────────── PLNmodels 1.2.0 ────
-
-