add models

Signed-off-by: Peter St. John <pstjohn@nvidia.com>

Author: pstjohn

.github/workflows/bionemo-recipes.yml

@@ -22,6 +22,10 @@ concurrency:
 jobs:
   changed-files:
     runs-on: ubuntu-latest
+    outputs:
+      any_changed: ${{ steps.changed-files.outputs.any_changed }}
+      all_changed_files: ${{ steps.changed-files.outputs.all_changed_files }}
+
     steps:
       - uses: actions/checkout@v4
         with:
@@ -43,3 +47,55 @@ jobs:
           echo '${{ toJSON(steps.changed-files.outputs) }}'
         shell:
           bash
+
+  build-image:
+    needs:
+      - changed-files
+    runs-on: linux-amd64-cpu16
+    if: needs.changed-files.outputs.any_changed == 'true'
+    steps:
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ vars.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_PASSWORD }}
+
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          submodules: "recursive"
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Docker Metadata
+        id: metadata
+        uses: docker/metadata-action@v5
+        with:
+          images: svcbionemo023/bionemo-framework
+          tags: |
+            type=schedule
+            type=ref,event=branch
+            type=ref,event=tag
+            type=ref,event=pr
+            type=raw,value=${{ github.run_id }}
+
+      # This action sets up our cache-from and cache-to flags appropriately; see the README of this action for more
+      # info. It doesn't seem to cache correctly for merge_group events, so we need to add that as an extra argument in
+      # the step below. There's probably a slight optimization to be had here by caching from the pr- caches for
+      # merge_group events. See https://github.com/int128/docker-build-cache-config-action/issues/1005 for more info.
+      - uses: int128/docker-build-cache-config-action@v1
+        id: cache
+        with:
+          image: svcbionemo023/bionemo-build-cache
+
+      - name: Build and push
+        uses: docker/build-push-action@v5
+        with:
+          push: true
+          tags: ${{ steps.metadata.outputs.tags }}
+          labels: ${{ steps.metadata.outputs.labels }}
+          cache-from: |
+            ${{ steps.cache.outputs.cache-from }}
+            type=registry,ref=svcbionemo023/bionemo-build-cache:main
+          cache-to: ${{ steps.cache.outputs.cache-to }}

.github/workflows/unit-tests.yml

@@ -38,6 +38,8 @@ jobs:
             !models/**
             !recipes/**
             !**.md
+            !.github/**
+            .github/workflows/unit-tests.yml
 
       - name: Show output
         run: |
@@ -49,7 +51,7 @@ jobs:
   pre-commit:
     runs-on: ubuntu-latest
     needs: changed-files
-    if: needs.changed-files.outputs.any_changed == 'true'
+    if: needs.changed-files.outputs.any_changed == 'true' || needs.changed-files.result == 'skipped'
     steps:
       - uses: actions/checkout@v4
         with:

ci/scripts/license_check.py

@@ -67,7 +67,7 @@ def process_file(filepath: Path, dry_run: bool):
     lines = filepath.read_text().splitlines()
 
     start_line = 0
-    if lines[0].startswith("#!"):
+    if lines and lines[0].startswith("#!"):
         # Make sure there's a blank line after the shebang
         if lines[1] != "":
             lines.insert(1, "")