use working-directory

Signed-off-by: Peter St. John <pstjohn@nvidia.com>

Author: pstjohn

.github/workflows/bionemo-recipes.yml

@@ -62,6 +62,7 @@ jobs:
     strategy:
       matrix:
         dir: ${{ fromJson(needs.changed-dirs.outputs.dirs) }}
+      fail-fast: false
 
     steps:
       - name: Checkout repository
@@ -71,16 +72,13 @@ jobs:
           sparse-checkout: '${{ matrix.dir }}'
           sparse-checkout-cone-mode: false
 
-      - run: |
-          shopt -s dotglob
-          mv ${matrix.dir}/* .
-          rm -rf ${matrix.dir}
-
       - name: Install uv
         uses: astral-sh/setup-uv@v6
 
       - name: Install dependencies
+        working-directory: ${{ matrix.dir }}
         run: uv pip install -r requirements.txt
 
       - name: Run tests
+        working-directory: ${{ matrix.dir }}
         run: pytest -v .

.github/workflows/framework-unit-tests.yml

@@ -39,7 +39,7 @@ jobs:
             !recipes/**
             !**.md
             !.github/**
-            .github/workflows/unit-tests.yml
+            .github/workflows/framework-unit-tests.yml
 
       - name: Show output
         run: |