Add missing dependencies #123
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| name: Continuous Integration | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9.13", "3.10.5"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| pip install -e .[dev] | |
| - name: Execute Unit Tests | |
| run: | | |
| python -m pytest | |
| - name: Run csvtofhir CLI | |
| run: | | |
| csvtofhir validate -f demo/config/data-contract.json | |
| csvtofhir convert -f demo/input/patient.csv -c demo/config -o demo/output | |
| rm -rf demo/output | |
| mkdir -p demo/output | |
| csvtofhir convert -d demo -o demo/output |