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lkhiltonclaude
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lofreq: update golden files for morinlab fork (drop HQA field)
The morinlab fork's lofreq call binary does not emit the HQA (high-quality alignments) INFO field that was present in the CSB5 upstream build at 46bd58d. Update golden files to match. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Lines changed: 4 additions & 4 deletions

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Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,3 @@
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#CHROM POS ID REF ALT QUAL FILTER INFO
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chr1 125 . A T 414 PASS DP=50;AF=0.3;SB=0;DP4=35,0,15,0;HQA=15
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chr2 125 . G A 414 PASS DP=50;AF=0.3;SB=0;DP4=35,0,15,0;HQA=15
2+
chr1 125 . A T 414 PASS DP=50;AF=0.3;SB=0;DP4=35,0,15,0
3+
chr2 125 . G A 414 PASS DP=50;AF=0.3;SB=0;DP4=35,0,15,0
Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,3 @@
11
#CHROM POS ID REF ALT QUAL FILTER INFO
2-
chr1 125 . A T 414 PASS DP=50;AF=0.3;SB=0;DP4=35,0,15,0;HQA=15
3-
chr2 125 . G A 414 PASS DP=50;AF=0.3;SB=0;DP4=35,0,15,0;HQA=15
2+
chr1 125 . A T 414 PASS DP=50;AF=0.3;SB=0;DP4=35,0,15,0
3+
chr2 125 . G A 414 PASS DP=50;AF=0.3;SB=0;DP4=35,0,15,0

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