vcfscope-reporter/dxapp.json at master · KCCG/vcfscope-reporter · GitHub

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{
    "name": "kccg-performance-report",
    "title": "Create a Variant Call Performance Report (KCCG)",
    "summary": "Create a WGS performance report given one or more performance RDS files from kccg-performance-measure",
    "dxapi": "1.0.0",
    "version": "auto-updated-by-bamboo",
    "resources": "project-Bk6V4v00jvx088XzjQf5F9bV",
    "contactOrgs": "http://www.garvan.org.au/research/kinghorn-centre-for-clinical-genomics/clinical-genomics",
    "developers": [ "org-garvan_kccg_developers" ],
    "authorizedUsers": [ "org-garvan_kccg", "org-garvan_kccg_developers" ],
    "categories": [ "Reports", "Statistics" ],
    "inputSpec": [
        {
            "name": "rdslist",
            "label": "Performance data",
            "help": "Performance data files generated by kccg-performance-measure, in RDS format.",
            "class": "array:file",
            "patterns": [ "*.rds" ]
        }
    ],
    "outputSpec": [
        {
            "patterns": [
                "*.pdf"
            ],
            "label": "Performance report PDF",
            "help": "The performance report, in PDF format.",
            "name": "pdf",
            "class": "file"
        },
        {
            "patterns": [
                "*.rds"
            ],
            "label": "Performance report RDS",
            "help": "Performance report summary data, in RDS format.",
            "name": "rds",
            "class": "file"
        }
    ],
    "runSpec": {
        "execDepends": [
            { "name": "texinfo" },
            { "name": "texlive" },
            { "name": "latex-xcolor" },
            { "name": "texlive-latex-extra" },
            { "name": "ghostscript" },
            { "name": "liblapack-dev" }
        ],
        "systemRequirements": {
            "main": {
                "instanceType": "mem1_ssd1_x2"
            }
        },
        "file": "src/code.sh",
        "interpreter": "bash"
    }
}