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Description
When using methylcheck.run_qc() without running any updated methylprep functions, the manifest name is different, so there is a file not found error.
FileNotFoundError Traceback (most recent call last)
<ipython-input-6-e73e0aa9d459> in <module>
----> 1 methylcheck.run_qc(initial_folder)
~/opt/anaconda3/lib/python3.8/site-packages/methylcheck/qc_plot.py in run_qc(path)
54 qc_signal_intensity(meth=meth_df, unmeth=unmeth_df, poobah=poobah)
55 plot_controls(controls, 'all')
---> 56 plot_beta_by_type(beta_df, 'all')
57
58
~/opt/anaconda3/lib/python3.8/site-packages/methylcheck/qc_plot.py in plot_beta_by_type(beta_df, probe_type, return_fig, silent, on_lambda)
550 LOGGER.setLevel(logging.INFO)
551 else:
--> 552 raise FileNotFoundError("manifest file not found.")
553
554 # merge reference col, filter probes, them remove ref col(s)
FileNotFoundError: manifest file not found.
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