-
Notifications
You must be signed in to change notification settings - Fork 2
Expand file tree
/
Copy pathrenv.lock
More file actions
6813 lines (6813 loc) · 392 KB
/
renv.lock
File metadata and controls
6813 lines (6813 loc) · 392 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
{
"R": {
"Version": "4.5.0",
"Repositories": [
{
"Name": "CRAN",
"URL": "https://cran.rstudio.com"
}
]
},
"Packages": {
"ASySD": {
"Package": "ASySD",
"Version": "0.4.6",
"Source": "GitHub",
"Title": "Automated Citation Deduplication",
"Authors@R": "c(person(\"Kaitlyn\",\"Hair\", , role = c(\"aut\", \"cre\", \"cph\"), email = \"kaitlyn.hair@ed.ac.uk\", comment = c(ORCID = \"0000-0003-0180-7343\")), person(\"Lukas\", \"Wallrich\", , role = \"aut\", email = \"lukas.wallrich@gmail.com\", comment = c(ORCID = \"0000-0003-2121-5177\")))",
"Description": "The Automated Systematic Search Deduplicator ('ASySD') includes functions to automatically detect and remove duplicate citations from literature searches. For details, see our paper \"The Automated Systematic Search Deduplicator (ASySD): a rapid, open-source, interoperable tool to remove duplicate citations in biomedical systematic reviews. Hair K / Bahor Z / Macleod M / Liao J / Sena E (2023) <doi:10.1186/s12915-023-01686-z>.",
"BugReports": "https://github.com/camaradesuk/ASySD/issues",
"License": "GPL (>= 3) + file LICENSE",
"Encoding": "UTF-8",
"LazyData": "true",
"Roxygen": "list(markdown = TRUE)",
"RoxygenNote": "7.2.3",
"Imports": [
"parallel",
"parallelly",
"RecordLinkage",
"XML",
"synthesisr",
"utf8",
"tidyr",
"rlang",
"shiny",
"RefManageR",
"dplyr",
"progressr",
"igraph",
"shinyjs",
"keys",
"shinythemes",
"glue",
"bibliometrix"
],
"Suggests": [
"knitr",
"gt",
"plyr",
"readr",
"magrittr",
"roxygen2",
"stringr",
"rmarkdown",
"testthat (>= 3.0.0)"
],
"Config/testthat/edition": "3",
"URL": "https://camaradesuk.github.io/ASySD/",
"VignetteBuilder": "knitr",
"Depends": [
"R (>= 2.10)"
],
"Author": "Kaitlyn Hair [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-0180-7343>), Lukas Wallrich [aut] (ORCID: <https://orcid.org/0000-0003-2121-5177>)",
"Maintainer": "Kaitlyn Hair <kaitlyn.hair@ed.ac.uk>",
"RemoteType": "github",
"RemoteHost": "api.github.com",
"RemoteUsername": "camaradesuk",
"RemoteRepo": "ASySD",
"RemoteRef": "master",
"RemoteSha": "df54be9d7850df603d34a406e42590b682687c02"
},
"DBI": {
"Package": "DBI",
"Version": "1.2.3",
"Source": "Repository",
"Title": "R Database Interface",
"Date": "2024-06-02",
"Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )",
"Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.",
"License": "LGPL (>= 2.1)",
"URL": "https://dbi.r-dbi.org, https://github.com/r-dbi/DBI",
"BugReports": "https://github.com/r-dbi/DBI/issues",
"Depends": [
"methods",
"R (>= 3.0.0)"
],
"Suggests": [
"arrow",
"blob",
"covr",
"DBItest",
"dbplyr",
"downlit",
"dplyr",
"glue",
"hms",
"knitr",
"magrittr",
"nanoarrow (>= 0.3.0.1)",
"RMariaDB",
"rmarkdown",
"rprojroot",
"RSQLite (>= 1.1-2)",
"testthat (>= 3.0.0)",
"vctrs",
"xml2"
],
"VignetteBuilder": "knitr",
"Config/autostyle/scope": "line_breaks",
"Config/autostyle/strict": "false",
"Config/Needs/check": "r-dbi/DBItest",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.1",
"Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr",
"Config/testthat/edition": "3",
"NeedsCompilation": "no",
"Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), R Consortium [fnd]",
"Maintainer": "Kirill Müller <kirill@cynkra.com>",
"Repository": "CRAN"
},
"DT": {
"Package": "DT",
"Version": "0.34.0",
"Source": "Repository",
"Type": "Package",
"Title": "A Wrapper of the JavaScript Library 'DataTables'",
"Authors@R": "c( person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Xianying\", \"Tan\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Maximilian\", \"Girlich\", role = \"ctb\"), person(\"Greg\", \"Freedman Ellis\", role = \"ctb\"), person(\"Johannes\", \"Rauh\", role = \"ctb\"), person(\"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables in htmlwidgets/lib\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js in htmlwidgets/lib\"), person(\"Leon\", \"Gersen\", role = c(\"ctb\", \"cph\"), comment = \"noUiSlider in htmlwidgets/lib\"), person(\"Bartek\", \"Szopka\", role = c(\"ctb\", \"cph\"), comment = \"jquery.highlight.js in htmlwidgets/lib\"), person(\"Alex\", \"Pickering\", role = \"ctb\"), person(\"William\", \"Holmes\", role = \"ctb\"), person(\"Mikko\", \"Marttila\", role = \"ctb\"), person(\"Andres\", \"Quintero\", role = \"ctb\"), person(\"Stéphane\", \"Laurent\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
"Description": "Data objects in R can be rendered as HTML tables using the JavaScript library 'DataTables' (typically via R Markdown or Shiny). The 'DataTables' library has been included in this R package. The package name 'DT' is an abbreviation of 'DataTables'.",
"License": "MIT + file LICENSE",
"URL": "https://github.com/rstudio/DT",
"BugReports": "https://github.com/rstudio/DT/issues",
"Imports": [
"crosstalk",
"htmltools (>= 0.3.6)",
"htmlwidgets (>= 1.3)",
"jquerylib",
"jsonlite (>= 0.9.16)",
"magrittr",
"promises"
],
"Suggests": [
"bslib",
"future",
"httpuv",
"knitr (>= 1.8)",
"rmarkdown",
"shiny (>= 1.6)",
"testit",
"tibble"
],
"VignetteBuilder": "knitr",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.2",
"NeedsCompilation": "no",
"Author": "Yihui Xie [aut], Joe Cheng [aut], Xianying Tan [aut], Garrick Aden-Buie [aut, cre] (ORCID: <https://orcid.org/0000-0002-7111-0077>), JJ Allaire [ctb], Maximilian Girlich [ctb], Greg Freedman Ellis [ctb], Johannes Rauh [ctb], SpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib), Brian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib), Leon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib), Bartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib), Alex Pickering [ctb], William Holmes [ctb], Mikko Marttila [ctb], Andres Quintero [ctb], Stéphane Laurent [ctb], Posit Software, PBC [cph, fnd]",
"Maintainer": "Garrick Aden-Buie <garrick@posit.co>",
"Repository": "CRAN"
},
"KernSmooth": {
"Package": "KernSmooth",
"Version": "2.23-26",
"Source": "Repository",
"Priority": "recommended",
"Date": "2024-12-10",
"Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)",
"Authors@R": "c(person(\"Matt\", \"Wand\", role = \"aut\", email = \"Matt.Wand@uts.edu.au\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src/d*\"), person(\"Brian\", \"Ripley\", role = c(\"trl\", \"cre\", \"ctb\"), email = \"Brian.Ripley@R-project.org\", comment = \"R port and updates\"))",
"Note": "Maintainers are not available to give advice on using a package they did not author.",
"Depends": [
"R (>= 2.5.0)",
"stats"
],
"Suggests": [
"MASS",
"carData"
],
"Description": "Functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) \"Kernel Smoothing\".",
"License": "Unlimited",
"ByteCompile": "yes",
"NeedsCompilation": "yes",
"Author": "Matt Wand [aut], Cleve Moler [ctb] (LINPACK routines in src/d*), Brian Ripley [trl, cre, ctb] (R port and updates)",
"Maintainer": "Brian Ripley <Brian.Ripley@R-project.org>",
"Repository": "CRAN"
},
"MASS": {
"Package": "MASS",
"Version": "7.3-65",
"Source": "Repository",
"Priority": "recommended",
"Date": "2025-02-19",
"Revision": "$Rev: 3681 $",
"Depends": [
"R (>= 4.4.0)",
"grDevices",
"graphics",
"stats",
"utils"
],
"Imports": [
"methods"
],
"Suggests": [
"lattice",
"nlme",
"nnet",
"survival"
],
"Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"Bill\", \"Venables\", role = c(\"aut\", \"cph\")), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\", comment = \"support functions for polr\"))",
"Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).",
"Title": "Support Functions and Datasets for Venables and Ripley's MASS",
"LazyData": "yes",
"ByteCompile": "yes",
"License": "GPL-2 | GPL-3",
"URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
"Contact": "<MASS@stats.ox.ac.uk>",
"NeedsCompilation": "yes",
"Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)",
"Maintainer": "Brian Ripley <Brian.Ripley@R-project.org>",
"Repository": "CRAN"
},
"Matrix": {
"Package": "Matrix",
"Version": "1.7-3",
"Source": "Repository",
"VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h",
"Date": "2025-03-05",
"Priority": "recommended",
"Title": "Sparse and Dense Matrix Classes and Methods",
"Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.",
"License": "GPL (>= 2) | file LICENCE",
"URL": "https://Matrix.R-forge.R-project.org",
"BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
"Contact": "Matrix-authors@R-project.org",
"Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = c(ROR = \"02zz1nj61\", \"base R's matrix implementation\")))",
"Depends": [
"R (>= 4.4)",
"methods"
],
"Imports": [
"grDevices",
"graphics",
"grid",
"lattice",
"stats",
"utils"
],
"Suggests": [
"MASS",
"datasets",
"sfsmisc",
"tools"
],
"Enhances": [
"SparseM",
"graph"
],
"LazyData": "no",
"LazyDataNote": "not possible, since we use data/*.R and our S4 classes",
"BuildResaveData": "no",
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Mikael Jagan [aut] (<https://orcid.org/0000-0002-3542-2938>), Timothy A. Davis [ctb] (<https://orcid.org/0000-0001-7614-6899>, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (<https://orcid.org/0000-0003-2753-1437>, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (<https://orcid.org/0000-0002-4345-4200>, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (02zz1nj61, base R's matrix implementation)",
"Maintainer": "Martin Maechler <mmaechler+Matrix@gmail.com>",
"Repository": "CRAN"
},
"R6": {
"Package": "R6",
"Version": "2.6.1",
"Source": "Repository",
"Title": "Encapsulated Classes with Reference Semantics",
"Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
"Description": "Creates classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.",
"License": "MIT + file LICENSE",
"URL": "https://r6.r-lib.org, https://github.com/r-lib/R6",
"BugReports": "https://github.com/r-lib/R6/issues",
"Depends": [
"R (>= 3.6)"
],
"Suggests": [
"lobstr",
"testthat (>= 3.0.0)"
],
"Config/Needs/website": "tidyverse/tidytemplate, ggplot2, microbenchmark, scales",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.2",
"NeedsCompilation": "no",
"Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
"Maintainer": "Winston Chang <winston@posit.co>",
"Repository": "https://packagemanager.posit.co/cran/latest"
},
"RColorBrewer": {
"Package": "RColorBrewer",
"Version": "1.1-3",
"Source": "Repository",
"Date": "2022-04-03",
"Title": "ColorBrewer Palettes",
"Authors@R": "c(person(given = \"Erich\", family = \"Neuwirth\", role = c(\"aut\", \"cre\"), email = \"erich.neuwirth@univie.ac.at\"))",
"Author": "Erich Neuwirth [aut, cre]",
"Maintainer": "Erich Neuwirth <erich.neuwirth@univie.ac.at>",
"Depends": [
"R (>= 2.0.0)"
],
"Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.",
"License": "Apache License 2.0",
"NeedsCompilation": "no",
"Repository": "https://packagemanager.posit.co/cran/latest",
"Encoding": "UTF-8"
},
"RSQLite": {
"Package": "RSQLite",
"Version": "2.4.6",
"Source": "Repository",
"Title": "SQLite Interface for R",
"Date": "2026-02-05",
"Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(c(\"David\", \"A.\"), \"James\", role = \"aut\"), person(\"Seth\", \"Falcon\", role = \"aut\"), person(\"D. Richard\", \"Hipp\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Dan\", \"Kennedy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Joe\", \"Mistachkin\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(, \"SQLite Authors\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Liam\", \"Healy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"R Consortium\", role = \"fnd\"), person(, \"RStudio\", role = \"cph\") )",
"Description": "Embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine (version 3.51.2) and for various extensions is included. System libraries will never be consulted because this package relies on static linking for the plugins it includes; this also ensures a consistent experience across all installations.",
"License": "LGPL (>= 2.1)",
"URL": "https://rsqlite.r-dbi.org, https://github.com/r-dbi/RSQLite",
"BugReports": "https://github.com/r-dbi/RSQLite/issues",
"Depends": [
"R (>= 3.1.0)"
],
"Imports": [
"bit64",
"blob (>= 1.2.0)",
"DBI (>= 1.2.0)",
"memoise",
"methods",
"pkgconfig",
"rlang"
],
"Suggests": [
"callr",
"cli",
"DBItest (>= 1.8.0)",
"decor",
"gert",
"gh",
"hms",
"knitr",
"magrittr",
"rmarkdown",
"rvest",
"testthat (>= 3.0.0)",
"withr",
"xml2"
],
"LinkingTo": [
"cpp11 (>= 0.4.0)"
],
"VignetteBuilder": "knitr",
"Config/Needs/website": "r-dbi/dbitemplate",
"Config/autostyle/scope": "line_breaks",
"Config/autostyle/strict": "false",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.3.9000",
"Collate": "'SQLiteConnection.R' 'SQLKeywords_SQLiteConnection.R' 'SQLiteDriver.R' 'SQLite.R' 'SQLiteResult.R' 'coerce.R' 'compatRowNames.R' 'copy.R' 'cpp11.R' 'datasetsDb.R' 'dbAppendTable_SQLiteConnection.R' 'dbBeginTransaction.R' 'dbBegin_SQLiteConnection.R' 'dbBind_SQLiteResult.R' 'dbClearResult_SQLiteResult.R' 'dbColumnInfo_SQLiteResult.R' 'dbCommit_SQLiteConnection.R' 'dbConnect_SQLiteConnection.R' 'dbConnect_SQLiteDriver.R' 'dbDataType_SQLiteConnection.R' 'dbDataType_SQLiteDriver.R' 'dbDisconnect_SQLiteConnection.R' 'dbExistsTable_SQLiteConnection_Id.R' 'dbExistsTable_SQLiteConnection_character.R' 'dbFetch_SQLiteResult.R' 'dbGetException_SQLiteConnection.R' 'dbGetInfo_SQLiteConnection.R' 'dbGetInfo_SQLiteDriver.R' 'dbGetPreparedQuery.R' 'dbGetPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbGetRowCount_SQLiteResult.R' 'dbGetRowsAffected_SQLiteResult.R' 'dbGetStatement_SQLiteResult.R' 'dbHasCompleted_SQLiteResult.R' 'dbIsValid_SQLiteConnection.R' 'dbIsValid_SQLiteDriver.R' 'dbIsValid_SQLiteResult.R' 'dbListResults_SQLiteConnection.R' 'dbListTables_SQLiteConnection.R' 'dbQuoteIdentifier_SQLiteConnection_SQL.R' 'dbQuoteIdentifier_SQLiteConnection_character.R' 'dbReadTable_SQLiteConnection_character.R' 'dbRemoveTable_SQLiteConnection_character.R' 'dbRollback_SQLiteConnection.R' 'dbSendPreparedQuery.R' 'dbSendPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbSendQuery_SQLiteConnection_character.R' 'dbUnloadDriver_SQLiteDriver.R' 'dbUnquoteIdentifier_SQLiteConnection_SQL.R' 'dbWriteTable_SQLiteConnection_character_character.R' 'dbWriteTable_SQLiteConnection_character_data.frame.R' 'db_bind.R' 'deprecated.R' 'export.R' 'fetch_SQLiteResult.R' 'import-standalone-check_suggested.R' 'import-standalone-purrr.R' 'initExtension.R' 'initRegExp.R' 'isSQLKeyword_SQLiteConnection_character.R' 'make.db.names_SQLiteConnection_character.R' 'pkgconfig.R' 'show_SQLiteConnection.R' 'sqlData_SQLiteConnection.R' 'table.R' 'transactions.R' 'utils.R' 'version.R' 'zzz.R'",
"NeedsCompilation": "yes",
"Author": "Kirill Müller [aut, cre] (ORCID: <https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], David A. James [aut], Seth Falcon [aut], D. Richard Hipp [ctb] (for the included SQLite sources), Dan Kennedy [ctb] (for the included SQLite sources), Joe Mistachkin [ctb] (for the included SQLite sources), SQLite Authors [ctb] (for the included SQLite sources), Liam Healy [ctb] (for the included SQLite sources), R Consortium [fnd], RStudio [cph]",
"Maintainer": "Kirill Müller <kirill@cynkra.com>",
"Repository": "CRAN"
},
"Rcpp": {
"Package": "Rcpp",
"Version": "1.1.1",
"Source": "Repository",
"Title": "Seamless R and C++ Integration",
"Date": "2026-01-07",
"Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))",
"Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013, <doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018, <doi:10.1080/00031305.2017.1375990>); see 'citation(\"Rcpp\")' for details.",
"Depends": [
"R (>= 3.5.0)"
],
"Imports": [
"methods",
"utils"
],
"Suggests": [
"tinytest",
"inline",
"rbenchmark",
"pkgKitten (>= 0.1.2)"
],
"URL": "https://www.rcpp.org, https://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp",
"License": "GPL (>= 2)",
"BugReports": "https://github.com/RcppCore/Rcpp/issues",
"MailingList": "rcpp-devel@lists.r-forge.r-project.org",
"RoxygenNote": "6.1.1",
"Encoding": "UTF-8",
"VignetteBuilder": "Rcpp",
"NeedsCompilation": "yes",
"Author": "Dirk Eddelbuettel [aut, cre] (ORCID: <https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (ORCID: <https://orcid.org/0000-0002-2444-4226>), JJ Allaire [aut] (ORCID: <https://orcid.org/0000-0003-0174-9868>), Kevin Ushey [aut] (ORCID: <https://orcid.org/0000-0003-2880-7407>), Qiang Kou [aut] (ORCID: <https://orcid.org/0000-0001-6786-5453>), Nathan Russell [aut], Iñaki Ucar [aut] (ORCID: <https://orcid.org/0000-0001-6403-5550>), Doug Bates [aut] (ORCID: <https://orcid.org/0000-0001-8316-9503>), John Chambers [aut]",
"Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
"Repository": "CRAN"
},
"RecordLinkage": {
"Package": "RecordLinkage",
"Version": "0.4-12.6",
"Source": "Repository",
"Title": "Record Linkage Functions for Linking and Deduplicating Data Sets",
"Authors@R": "c(person(given = \"Murat\", family = \"Sariyar\", role = c(\"aut\", \"cre\"), email = \"murat.sariyar@bfh.ch\"), person(given = \"Andreas\", family = \"Borg\", role = \"aut\", email = \"andreas.borg.public@posteo.de\"))",
"Description": "Provides functions for linking and deduplicating data sets. Methods based on a stochastic approach are implemented as well as classification algorithms from the machine learning domain. For details, see our paper \"The RecordLinkage Package: Detecting Errors in Data\" Sariyar M / Borg A (2010) <doi:10.32614/RJ-2010-017>.",
"License": "GPL (>= 2)",
"Encoding": "UTF-8",
"LazyData": "true",
"VignetteBuilder": "knitr",
"Depends": [
"R (>= 3.5.0)",
"DBI",
"RSQLite(>= 1.0.0)",
"ff"
],
"Imports": [
"e1071",
"rpart",
"ipred",
"stats",
"evd",
"methods",
"data.table (>= 1.7.8)",
"nnet",
"xtable"
],
"Suggests": [
"knitr",
"rmarkdown"
],
"Collate": "register-S3-classes.r RLBigData-classes.r RLResult-class.r accessor-methods.r evt.r classify.r classifySupv-methods.r genSamples.r strcmp.r compare.r getPairs.r summary.r em-methods.r internals.r em.r mygllm.r epilink-methods.r phonetics.r onAttach.r getPairs-methods.r serialization.r tools.r stochastic.r",
"NeedsCompilation": "yes",
"Author": "Murat Sariyar [aut, cre], Andreas Borg [aut]",
"Maintainer": "Murat Sariyar <murat.sariyar@bfh.ch>",
"Repository": "CRAN"
},
"RefManageR": {
"Package": "RefManageR",
"Version": "1.4.0",
"Source": "Repository",
"Title": "Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management",
"Authors@R": "person(c(\"Mathew\", \"W.\"), \"McLean\", role = c(\"aut\", \"cre\"), email = \"mathew.w.mclean@gmail.com\", comment = c(ORCID = \"0000-0002-7891-9645\"))",
"Maintainer": "Mathew W. McLean <mathew.w.mclean@gmail.com>",
"Description": "Provides tools for importing and working with bibliographic references. It greatly enhances the 'bibentry' class by providing a class 'BibEntry' which stores 'BibTeX' and 'BibLaTeX' references, supports 'UTF-8' encoding, and can be easily searched by any field, by date ranges, and by various formats for name lists (author by last names, translator by full names, etc.). Entries can be updated, combined, sorted, printed in a number of styles, and exported. 'BibTeX' and 'BibLaTeX' '.bib' files can be read into 'R' and converted to 'BibEntry' objects. Interfaces to 'NCBI Entrez', 'CrossRef', and 'Zotero' are provided for importing references and references can be created from locally stored 'PDF' files using 'Poppler'. Includes functions for citing and generating a bibliography with hyperlinks for documents prepared with 'RMarkdown' or 'RHTML'.",
"License": "GPL-2 | GPL-3 | BSD_3_clause + file LICENSE",
"Imports": [
"xml2",
"jsonlite",
"utils",
"plyr",
"tools",
"httr",
"lubridate (>= 1.5.0)",
"stringr",
"methods",
"bibtex (>= 0.4.1)"
],
"Suggests": [
"knitr",
"markdown",
"testthat"
],
"Encoding": "UTF-8",
"Depends": [
"R (>= 3.0)"
],
"VignetteBuilder": "knitr",
"BugReports": "https://github.com/ropensci/RefManageR/issues",
"URL": "https://github.com/ropensci/RefManageR/",
"RoxygenNote": "7.2.1",
"NeedsCompilation": "no",
"Author": "Mathew W. McLean [aut, cre] (<https://orcid.org/0000-0002-7891-9645>)",
"Repository": "CRAN"
},
"S7": {
"Package": "S7",
"Version": "0.2.1",
"Source": "Repository",
"Title": "An Object Oriented System Meant to Become a Successor to S3 and S4",
"Authors@R": "c( person(\"Object-Oriented Programming Working Group\", role = \"cph\"), person(\"Davis\", \"Vaughan\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"Will\", \"Landau\", role = \"aut\"), person(\"Michael\", \"Lawrence\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Luke\", \"Tierney\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")) )",
"Description": "A new object oriented programming system designed to be a successor to S3 and S4. It includes formal class, generic, and method specification, and a limited form of multiple dispatch. It has been designed and implemented collaboratively by the R Consortium Object-Oriented Programming Working Group, which includes representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and the wider R community.",
"License": "MIT + file LICENSE",
"URL": "https://rconsortium.github.io/S7/, https://github.com/RConsortium/S7",
"BugReports": "https://github.com/RConsortium/S7/issues",
"Depends": [
"R (>= 3.5.0)"
],
"Imports": [
"utils"
],
"Suggests": [
"bench",
"callr",
"covr",
"knitr",
"methods",
"rmarkdown",
"testthat (>= 3.2.0)",
"tibble"
],
"VignetteBuilder": "knitr",
"Config/build/compilation-database": "true",
"Config/Needs/website": "sloop",
"Config/testthat/edition": "3",
"Config/testthat/parallel": "TRUE",
"Config/testthat/start-first": "external-generic",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.3",
"NeedsCompilation": "yes",
"Author": "Object-Oriented Programming Working Group [cph], Davis Vaughan [aut], Jim Hester [aut] (ORCID: <https://orcid.org/0000-0002-2739-7082>), Tomasz Kalinowski [aut], Will Landau [aut], Michael Lawrence [aut], Martin Maechler [aut] (ORCID: <https://orcid.org/0000-0002-8685-9910>), Luke Tierney [aut], Hadley Wickham [aut, cre] (ORCID: <https://orcid.org/0000-0003-4757-117X>)",
"Maintainer": "Hadley Wickham <hadley@posit.co>",
"Repository": "CRAN"
},
"SQUAREM": {
"Package": "SQUAREM",
"Version": "2021.1",
"Source": "Repository",
"Date": "2021-01-12",
"Title": "Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms",
"Description": "Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM algorithm. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette(\"SQUAREM\"). Refer to the J Stat Software article: <doi:10.18637/jss.v092.i07>.",
"Depends": [
"R (>= 3.0)"
],
"Suggests": [
"setRNG"
],
"LazyLoad": "yes",
"License": "GPL (>= 2)",
"Author": "Ravi Varadhan",
"Maintainer": "Ravi Varadhan <ravi.varadhan@jhu.edu>",
"URL": "https://coah.jhu.edu/people/Faculty_personal_Pages/Varadhan.html",
"Repository": "CRAN",
"NeedsCompilation": "no"
},
"SnowballC": {
"Package": "SnowballC",
"Version": "0.7.1",
"Source": "Repository",
"Type": "Package",
"Date": "2023-04-25",
"Title": "Snowball Stemmers Based on the C 'libstemmer' UTF-8 Library",
"Authors@R": "person(\"Milan\", \"Bouchet-Valat\", email=\"nalimilan@club.fr\", role=c(\"aut\", \"cre\"))",
"Description": "An R interface to the C 'libstemmer' library that implements Porter's word stemming algorithm for collapsing words to a common root to aid comparison of vocabulary. Currently supported languages are Arabic, Basque, Catalan, Danish, Dutch, English, Finnish, French, German, Greek, Hindi, Hungarian, Indonesian, Irish, Italian, Lithuanian, Nepali, Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish, Tamil and Turkish.",
"License": "BSD_3_clause + file LICENSE",
"Copyright": "Dr Martin Porter (2001) and Richard Boulton (2004, 2005) for the 'libstemmer' C library, and Milan Bouchet-Valat (2013) for the R package contents.",
"URL": "https://github.com/nalimilan/R.TeMiS",
"BugReports": "https://github.com/nalimilan/R.TeMiS/issues",
"NeedsCompilation": "yes",
"Author": "Milan Bouchet-Valat [aut, cre]",
"Maintainer": "Milan Bouchet-Valat <nalimilan@club.fr>",
"Repository": "https://packagemanager.posit.co/cran/latest",
"Encoding": "UTF-8"
},
"UpSetR": {
"Package": "UpSetR",
"Version": "1.4.0",
"Source": "Repository",
"Title": "A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets",
"Date": "2019-5-9",
"URL": "http://github.com/hms-dbmi/UpSetR",
"BugReports": "http://github.com/hms-dbmi/UpSetR/issues",
"Authors@R": "c( person(\"Jake\", \"Conway\", email = \"jake_conway@hms.harvard.edu\", role = \"cre\"), person(\"Nils\", \"Gehlenborg\", email = \"nils@hms.harvard.edu\", role = \"aut\"))",
"Description": "Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks (Conway 2017) <doi:10.1093/bioinformatics/btx364>.",
"Depends": [
"R (>= 3.0)"
],
"Imports": [
"ggplot2",
"gridExtra",
"plyr",
"utils",
"stats",
"methods",
"grDevices",
"scales"
],
"License": "MIT + file LICENSE",
"LazyData": "true",
"VignetteBuilder": "knitr",
"Suggests": [
"knitr"
],
"RoxygenNote": "6.1.0",
"NeedsCompilation": "no",
"Author": "Jake Conway [cre], Nils Gehlenborg [aut]",
"Maintainer": "Jake Conway <jake_conway@hms.harvard.edu>",
"Repository": "CRAN"
},
"V8": {
"Package": "V8",
"Version": "8.0.1",
"Source": "Repository",
"Type": "Package",
"Title": "Embedded JavaScript and WebAssembly Engine for R",
"Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"George\", \"Stagg\", role = \"ctb\", comment = c(ORCID = \"0009-0006-3173-9846\")), person(\"Jan Marvin\", \"Garbuszus\", role = \"ctb\"))",
"Description": "An R interface to V8 <https://v8.dev>: Google's open source JavaScript and WebAssembly engine. This package can be compiled either with V8 or NodeJS when built as a shared library.",
"License": "MIT + file LICENSE",
"URL": "https://jeroen.r-universe.dev/V8",
"BugReports": "https://github.com/jeroen/v8/issues",
"SystemRequirements": "On Linux you can build against libv8-dev (Debian) or v8-devel (Fedora). We also provide static libv8 binaries for most platforms, see the README for details.",
"NeedsCompilation": "yes",
"VignetteBuilder": "knitr",
"Imports": [
"Rcpp (>= 0.12.12)",
"jsonlite (>= 1.0)",
"curl (>= 1.0)",
"utils"
],
"LinkingTo": [
"Rcpp"
],
"Suggests": [
"testthat",
"knitr",
"rmarkdown"
],
"RoxygenNote": "7.3.1",
"Language": "en-US",
"Encoding": "UTF-8",
"Biarch": "true",
"Author": "Jeroen Ooms [aut, cre] (ORCID: <https://orcid.org/0000-0002-4035-0289>), George Stagg [ctb] (ORCID: <https://orcid.org/0009-0006-3173-9846>), Jan Marvin Garbuszus [ctb]",
"Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
"Repository": "CRAN"
},
"XML": {
"Package": "XML",
"Version": "3.99-0.22",
"Source": "Repository",
"Authors@R": "c(person(\"CRAN Team\", role = \"ctb\", email = \"CRAN@r-project.org\", comment = \"de facto maintainer in 2013-2026\"), person(\"Duncan\", \"Temple Lang\", role = \"aut\", email = \"duncan@r-project.org\", comment = c(ORCID = \"0000-0003-0159-1546\")), person(\"Tomas\", \"Kalibera\", role = \"ctb\"), person(\"Ivan\", \"Krylov\", email = \"ikrylov@disroot.org\", role = \"cre\"))",
"Title": "Tools for Parsing and Generating XML Within R and S-Plus",
"Depends": [
"R (>= 4.0.0)",
"methods",
"utils"
],
"Suggests": [
"bitops",
"RCurl"
],
"SystemRequirements": "libxml2 (>= 2.6.3)",
"Description": "Many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. Also offers access to an 'XPath' \"interpreter\".",
"BugReports": "https://codeberg.org/aitap/XML/issues",
"License": "BSD_3_clause + file LICENSE",
"Collate": "AAA.R DTD.R DTDClasses.R DTDRef.R SAXMethods.R XMLClasses.R applyDOM.R assignChild.R catalog.R createNode.R dynSupports.R error.R flatTree.R nodeAccessors.R parseDTD.R schema.R summary.R tangle.R toString.R tree.R version.R xmlErrorEnums.R xmlEventHandler.R xmlEventParse.R xmlHandler.R xmlInternalSource.R xmlOutputDOM.R xmlNodes.R xmlOutputBuffer.R xmlTree.R xmlTreeParse.R htmlParse.R hashTree.R zzz.R supports.R parser.R libxmlFeatures.R xmlString.R saveXML.R namespaces.R readHTMLTable.R reflection.R xmlToDataFrame.R bitList.R compare.R encoding.R fixNS.R xmlRoot.R serialize.R xmlMemoryMgmt.R keyValueDB.R solrDocs.R XMLRErrorInfo.R xincludes.R namespaceHandlers.R tangle1.R htmlLinks.R htmlLists.R getDependencies.R getRelativeURL.R xmlIncludes.R simplifyPath.R",
"NeedsCompilation": "yes",
"Author": "CRAN Team [ctb] (de facto maintainer in 2013-2026), Duncan Temple Lang [aut] (ORCID: <https://orcid.org/0000-0003-0159-1546>), Tomas Kalibera [ctb], Ivan Krylov [cre]",
"Maintainer": "Ivan Krylov <ikrylov@disroot.org>",
"Repository": "CRAN"
},
"askpass": {
"Package": "askpass",
"Version": "1.2.1",
"Source": "Repository",
"Type": "Package",
"Title": "Password Entry Utilities for R, Git, and SSH",
"Authors@R": "person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\"))",
"Description": "Cross-platform utilities for prompting the user for credentials or a passphrase, for example to authenticate with a server or read a protected key. Includes native programs for MacOS and Windows, hence no 'tcltk' is required. Password entry can be invoked in two different ways: directly from R via the askpass() function, or indirectly as password-entry back-end for 'ssh-agent' or 'git-credential' via the SSH_ASKPASS and GIT_ASKPASS environment variables. Thereby the user can be prompted for credentials or a passphrase if needed when R calls out to git or ssh.",
"License": "MIT + file LICENSE",
"URL": "https://r-lib.r-universe.dev/askpass",
"BugReports": "https://github.com/r-lib/askpass/issues",
"Encoding": "UTF-8",
"Imports": [
"sys (>= 2.1)"
],
"RoxygenNote": "7.2.3",
"Suggests": [
"testthat"
],
"Language": "en-US",
"NeedsCompilation": "yes",
"Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)",
"Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
"Repository": "https://packagemanager.posit.co/cran/latest"
},
"backports": {
"Package": "backports",
"Version": "1.5.0",
"Source": "Repository",
"Type": "Package",
"Title": "Reimplementations of Functions Introduced Since R-3.0.0",
"Authors@R": "c( person(\"Michel\", \"Lang\", NULL, \"michellang@gmail.com\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Duncan\", \"Murdoch\", NULL, \"murdoch.duncan@gmail.com\", role = c(\"aut\")), person(\"R Core Team\", role = \"aut\"))",
"Maintainer": "Michel Lang <michellang@gmail.com>",
"Description": "Functions introduced or changed since R v3.0.0 are re-implemented in this package. The backports are conditionally exported in order to let R resolve the function name to either the implemented backport, or the respective base version, if available. Package developers can make use of new functions or arguments by selectively importing specific backports to support older installations.",
"URL": "https://github.com/r-lib/backports",
"BugReports": "https://github.com/r-lib/backports/issues",
"License": "GPL-2 | GPL-3",
"NeedsCompilation": "yes",
"ByteCompile": "yes",
"Depends": [
"R (>= 3.0.0)"
],
"Encoding": "UTF-8",
"RoxygenNote": "7.3.1",
"Author": "Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>), Duncan Murdoch [aut], R Core Team [aut]",
"Repository": "CRAN"
},
"base64enc": {
"Package": "base64enc",
"Version": "0.1-6",
"Source": "Repository",
"Title": "Tools for 'base64' Encoding",
"Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.nz, ORCID: <https://orcid.org/0000-0003-2297-1732>)",
"Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.nz\", ORCID=\"0000-0003-2297-1732\"))",
"Maintainer": "Simon Urbanek <Simon.Urbanek@r-project.org>",
"Depends": [
"R (>= 2.9.0)"
],
"Enhances": [
"png"
],
"Description": "Tools for handling 'base64' encoding. It is more flexible than the orphaned 'base64' package.",
"License": "GPL-2 | GPL-3",
"URL": "https://www.rforge.net/base64enc",
"BugReports": "https://github.com/s-u/base64enc/issues",
"NeedsCompilation": "yes",
"Repository": "CRAN"
},
"bibliometrix": {
"Package": "bibliometrix",
"Version": "5.2.1",
"Source": "Repository",
"Type": "Package",
"Title": "Comprehensive Science Mapping Analysis",
"Authors@R": "c( person(given = \"Massimo\", family = \"Aria\", role = c(\"cre\", \"aut\", \"cph\"), email = \"aria@unina.it\", comment = c(ORCID = \"0000-0002-8517-9411\")), person(given = \"Corrado\", family = \"Cuccurullo\", role = \"aut\", email = \"cuccurullocorrado@gmail.com\", comment = c(ORCID = \"0000-0002-7401-8575\")))",
"Description": "Tool for quantitative research in scientometrics and bibliometrics. It implements the comprehensive workflow for science mapping analysis proposed in Aria M. and Cuccurullo C. (2017) <doi:10.1016/j.joi.2017.08.007>. 'bibliometrix' provides various routines for importing bibliographic data from 'SCOPUS', 'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions' (<https://www.dimensions.ai/>), 'OpenAlex' (<https://openalex.org/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>), and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis and building networks for co-citation, coupling, scientific collaboration and co-word analysis.",
"License": "GPL-3",
"URL": "https://www.bibliometrix.org, https://github.com/massimoaria/bibliometrix, https://www.k-synth.com",
"BugReports": "https://github.com/massimoaria/bibliometrix/issues",
"LazyData": "true",
"Encoding": "UTF-8",
"Depends": [
"R (>= 3.3.0)"
],
"Imports": [
"stats",
"grDevices",
"bibliometrixData",
"contentanalysis",
"dimensionsR",
"dplyr",
"DT",
"ca",
"forcats",
"ggplot2",
"ggrepel",
"igraph",
"Matrix",
"plotly",
"openalexR",
"openxlsx",
"pubmedR",
"purrr",
"readr",
"readxl",
"rscopus",
"shiny",
"shinycssloaders (>= 1.1.0)",
"SnowballC",
"stringdist",
"stringi",
"stringr",
"tibble",
"tidyr",
"tidytext",
"visNetwork"
],
"Suggests": [
"knitr",
"rmarkdown",
"testthat (>= 3.0.0)",
"wordcloud2"
],
"RoxygenNote": "7.3.3",
"NeedsCompilation": "no",
"Config/testthat/edition": "3",
"Author": "Massimo Aria [cre, aut, cph] (ORCID: <https://orcid.org/0000-0002-8517-9411>), Corrado Cuccurullo [aut] (ORCID: <https://orcid.org/0000-0002-7401-8575>)",
"Maintainer": "Massimo Aria <aria@unina.it>",
"Repository": "CRAN"
},
"bibliometrixData": {
"Package": "bibliometrixData",
"Version": "0.3.0",
"Source": "Repository",
"Title": "Bibliometrix Example Datasets",
"Authors@R": "person(given = \"Massimo\", family = \"Aria\", role = c(\"aut\", \"cre\"), email = \"massimo.aria@gmail.com\", comment = c(ORCID = \"0000-0002-8517-9411\"))",
"Description": "It contains some example datasets used in 'bibliometrix'. The data are bibliographic datasets exported from the 'SCOPUS' (<https://scopus.com>) and 'Clarivate Analytics Web of Science' (<https://www.webofscience.com/>) databases. They can be used to test the different features of the package 'bibliometrix' (<https://bibliometrix.org>).",
"License": "MIT + file LICENSE",
"Encoding": "UTF-8",
"Depends": [
"R (>= 3.3.0)"
],
"Suggests": [
"bibliometrix"
],
"LazyData": "false",
"RoxygenNote": "7.1.1",
"NeedsCompilation": "no",
"Author": "Massimo Aria [aut, cre] (<https://orcid.org/0000-0002-8517-9411>)",
"Maintainer": "Massimo Aria <massimo.aria@gmail.com>",
"Repository": "CRAN"
},
"bibtex": {
"Package": "bibtex",
"Version": "0.5.2",
"Source": "Repository",
"Title": "Bibtex Parser",
"Authors@R": "c( person(given = \"Romain\", family = \"Francois\", role = c(\"aut\", \"cph\"), email = \"romain@purrple.cat\", comment = c(ORCID = \"0000-0002-2444-4226\", \"principal developer of bibtex R package\")), person(given = \"Diego\", family = \"Hernangómez\", role = c(\"aut\"), email = \"diego.hernangomezherrero@gmail.com\", comment = c(ORCID = \"0000-0001-8457-4658\")), person(given = c(\"James\", \"Joseph\"), family = \"Balamuta\", role = c(\"ctb\", \"cre\", \"aut\"), email = \"balamut2@illinois.edu\", comment = c(ORCID = \"0000-0003-2826-8458\")), person(given = \"Scott\", family = \"Chamberlain\", role = c(\"ctb\"), email = \"myrmecocystus@gmail.com\", comment = c(ORCID = \"0000-0003-1444-9135\")), person(given = \"Kurt\", family = \"Hornik\", role = \"ctb\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = \"Brian\", family = \"Ripley\", role = \"ctb\", email = \"ripley@stats.ox.ac.uk\", comment = \"compilation fixes\"), person(given = \"Michael\", family = \"Koohafkan\", role = \"ctb\", email = \"michael.koohafkan@gmail.com\"), person(given = c(\"Mathew\", \"W.\"), family = \"McLean\", role = \"ctb\", email = \"mathew.w.mclean@gmail.com\", comment = c(ORCID = \"0000-0002-7891-9645\") ) )",
"Description": "Utility to parse a bibtex file.",
"BugReports": "https://github.com/ropensci/bibtex/issues",
"URL": "https://github.com/ropensci/bibtex, https://docs.ropensci.org/bibtex/",
"License": "GPL (>= 2)",
"Depends": [
"R (>= 3.0.2)"
],
"Imports": [
"backports (>= 1.4.0)",
"utils"
],
"Suggests": [
"testthat (>= 3.0.0)"
],
"LazyLoad": "yes",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.3",
"Config/testthat/edition": "3",
"NeedsCompilation": "no",
"Author": "Romain Francois [aut, cph] (ORCID: <https://orcid.org/0000-0002-2444-4226>, principal developer of bibtex R package), Diego Hernangómez [aut] (ORCID: <https://orcid.org/0000-0001-8457-4658>), James Joseph Balamuta [ctb, cre, aut] (ORCID: <https://orcid.org/0000-0003-2826-8458>), Scott Chamberlain [ctb] (ORCID: <https://orcid.org/0000-0003-1444-9135>), Kurt Hornik [ctb] (ORCID: <https://orcid.org/0000-0003-4198-9911>), Brian Ripley [ctb] (compilation fixes), Michael Koohafkan [ctb], Mathew W. McLean [ctb] (ORCID: <https://orcid.org/0000-0002-7891-9645>)",
"Maintainer": "James Joseph Balamuta <balamut2@illinois.edu>",
"Repository": "CRAN"
},
"bigD": {
"Package": "bigD",
"Version": "0.3.1",
"Source": "Repository",
"Type": "Package",
"Title": "Flexibly Format Dates and Times to a Given Locale",
"Description": "Format dates and times flexibly and to whichever locales make sense. Parses dates, times, and date-times in various formats (including string-based ISO 8601 constructions). The formatting syntax gives the user many options for formatting the date and time output in a precise manner. Time zones in the input can be expressed in multiple ways and there are many options for formatting time zones in the output as well. Several of the provided helper functions allow for automatic generation of locale-aware formatting patterns based on date/time skeleton formats and standardized date/time formats with varying specificity.",
"Authors@R": "c( person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Olivier\", \"Roy\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
"License": "MIT + file LICENSE",
"URL": "https://rstudio.github.io/bigD/, https://github.com/rstudio/bigD",
"BugReports": "https://github.com/rstudio/bigD/issues",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.2",
"Depends": [
"R (>= 3.6.0)"
],
"Suggests": [
"testthat (>= 3.0.0)",
"vctrs (>= 0.5.0)"
],
"Config/testthat/edition": "3",
"Config/testthat/parallel": "true",
"NeedsCompilation": "no",
"Author": "Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>), Olivier Roy [ctb], Posit Software, PBC [cph, fnd]",
"Maintainer": "Richard Iannone <rich@posit.co>",
"Repository": "CRAN"
},
"bit": {
"Package": "bit",
"Version": "4.6.0",
"Source": "Repository",
"Title": "Classes and Methods for Fast Memory-Efficient Boolean Selections",
"Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"MichaelChirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Brian\", \"Ripley\", role = \"ctb\") )",
"Depends": [
"R (>= 3.4.0)"
],
"Suggests": [
"testthat (>= 3.0.0)",
"roxygen2",
"knitr",
"markdown",
"rmarkdown",
"microbenchmark",
"bit64 (>= 4.0.0)",
"ff (>= 4.0.0)"
],
"Description": "Provided are classes for boolean and skewed boolean vectors, fast boolean methods, fast unique and non-unique integer sorting, fast set operations on sorted and unsorted sets of integers, and foundations for ff (range index, compression, chunked processing).",
"License": "GPL-2 | GPL-3",
"LazyLoad": "yes",
"ByteCompile": "yes",
"Encoding": "UTF-8",
"URL": "https://github.com/r-lib/bit",
"VignetteBuilder": "knitr, rmarkdown",
"RoxygenNote": "7.3.2",
"Config/testthat/edition": "3",
"NeedsCompilation": "yes",
"Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Brian Ripley [ctb]",
"Maintainer": "Michael Chirico <MichaelChirico4@gmail.com>",
"Repository": "https://packagemanager.posit.co/cran/latest"
},
"bit64": {
"Package": "bit64",
"Version": "4.6.0-1",
"Source": "Repository",
"Title": "A S3 Class for Vectors of 64bit Integers",
"Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"michaelchirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Leonardo\", \"Silvestri\", role = \"ctb\"), person(\"Ofek\", \"Shilon\", role = \"ctb\") )",
"Depends": [
"R (>= 3.4.0)",
"bit (>= 4.0.0)"
],
"Description": "Package 'bit64' provides serializable S3 atomic 64bit (signed) integers. These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.",
"License": "GPL-2 | GPL-3",
"LazyLoad": "yes",
"ByteCompile": "yes",
"URL": "https://github.com/r-lib/bit64",
"Encoding": "UTF-8",
"Imports": [
"graphics",
"methods",
"stats",
"utils"
],
"Suggests": [
"testthat (>= 3.0.3)",
"withr"
],
"Config/testthat/edition": "3",
"Config/needs/development": "testthat",
"RoxygenNote": "7.3.2",
"NeedsCompilation": "yes",
"Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb]",
"Maintainer": "Michael Chirico <michaelchirico4@gmail.com>",
"Repository": "https://packagemanager.posit.co/cran/latest"
},
"bitops": {
"Package": "bitops",
"Version": "1.0-9",
"Source": "Repository",
"Date": "2024-10-03",
"Authors@R": "c( person(\"Steve\", \"Dutky\", role = \"aut\", email = \"sdutky@terpalum.umd.edu\", comment = \"S original; then (after MM's port) revised and modified\"), person(\"Martin\", \"Maechler\", role = c(\"cre\", \"aut\"), email = \"maechler@stat.math.ethz.ch\", comment = c(\"Initial R port; tweaks\", ORCID = \"0000-0002-8685-9910\")))",
"Title": "Bitwise Operations",
"Description": "Functions for bitwise operations on integer vectors.",
"License": "GPL (>= 2)",
"URL": "https://github.com/mmaechler/R-bitops",
"BugReports": "https://github.com/mmaechler/R-bitops/issues",
"NeedsCompilation": "yes",
"Author": "Steve Dutky [aut] (S original; then (after MM's port) revised and modified), Martin Maechler [cre, aut] (Initial R port; tweaks, <https://orcid.org/0000-0002-8685-9910>)",
"Maintainer": "Martin Maechler <maechler@stat.math.ethz.ch>",
"Repository": "CRAN"
},
"blob": {
"Package": "blob",
"Version": "1.3.0",
"Source": "Repository",
"Title": "A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')",
"Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
"Description": "R's raw vector is useful for storing a single binary object. What if you want to put a vector of them in a data frame? The 'blob' package provides the blob object, a list of raw vectors, suitable for use as a column in data frame.",
"License": "MIT + file LICENSE",
"URL": "https://blob.tidyverse.org, https://github.com/tidyverse/blob",
"BugReports": "https://github.com/tidyverse/blob/issues",
"Imports": [
"methods",
"rlang",
"vctrs (>= 0.2.1)"
],
"Suggests": [
"covr",
"crayon",
"pillar (>= 1.2.1)",
"testthat (>= 3.0.0)"
],
"Config/autostyle/scope": "line_breaks",
"Config/autostyle/strict": "false",
"Config/Needs/website": "tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.3.9000",
"NeedsCompilation": "no",
"Author": "Hadley Wickham [aut], Kirill Müller [cre], RStudio [cph, fnd]",
"Maintainer": "Kirill Müller <kirill@cynkra.com>",
"Repository": "CRAN"
},
"brio": {
"Package": "brio",
"Version": "1.1.5",
"Source": "Repository",
"Title": "Basic R Input Output",
"Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
"Description": "Functions to handle basic input output, these functions always read and write UTF-8 (8-bit Unicode Transformation Format) files and provide more explicit control over line endings.",
"License": "MIT + file LICENSE",
"URL": "https://brio.r-lib.org, https://github.com/r-lib/brio",
"BugReports": "https://github.com/r-lib/brio/issues",
"Depends": [
"R (>= 3.6)"
],
"Suggests": [
"covr",
"testthat (>= 3.0.0)"
],
"Config/Needs/website": "tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"RoxygenNote": "7.2.3",
"NeedsCompilation": "yes",
"Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]",
"Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
"Repository": "CRAN"
},
"bslib": {
"Package": "bslib",
"Version": "0.10.0",
"Source": "Repository",
"Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'",