Merge branch 'develop' of github.com:jvmead/ndlar_flow into develop

Author: James Vincent Mead

.github/workflows/test.yml

@@ -26,7 +26,7 @@ jobs:
     - name: checkout h5flow
       run: |
         cd ..
-        git clone https://github.com/peter-madigan/h5flow.git
+        git clone https://github.com/DUNE/h5flow.git
 
     - name: setup conda (mpi)
       uses: conda-incubator/setup-miniconda@v2

README.rst

@@ -194,6 +194,17 @@ To generate T0s and tracks, run::
     h5flow -c yamls/proto_nd_flow/workflows/combined/combined_reconstruction.yaml \
         -i <input file> -o <output file>
 
+pedestal generator
+---------------------------
+
+To generate channel-by-channel pedestals from a pedestal run .h5 file::
+    h5flow -c yamls/proto_nd_flow/workflows/charge/generate_pedestals_workflow.yaml \
+        -i <input file> -o <output file>
+
+Make sure to update yamls/proto_nd_flow/reco/charge/GeneratePedestals.yaml to use the correct configuration for the pedestal run input file.
+This workflow will generate both and hdf5 file and json file with the channel-by-channel pedestals. The json file is currently required
+by the other charge workflows. 
+
 minimal staging
 ---------------