add summary of the changes for the new release

and fix typos

Author: cpauvert

NEWS.md

@@ -1,8 +1,17 @@
-# maldipickr (development version)
+# maldipickr 1.3.3
 
 ## Fixed
 
 * Fix unwanted conversion to NAs when sample names were well numbers like E1 or E2 (#51, thanks for spotting this @sarah-lital)
+* Fix wrong number of columns documented in `read_biotyper_report()`
+
+## Changed
+
+* Specify the peer-reviewed article as a preferred citation source
+
+## Added
+
+* List open-source alternatives to maldipickr
 
 # maldipickr 1.3.2
 

README.md

@@ -63,7 +63,7 @@ through the package functions and showcase how to:
 
 <img width="2433" height="1701" alt="maldipickr-graphical-abstract" src="https://raw.githubusercontent.com/ClavelLab/maldipickr/main/man/figures/maldipickr-graphical-abstract.png"/>
 
-> Find a detailed version of the workflow diagram in `man/figures/`](https://raw.githubusercontent.com/ClavelLab/maldipickr/main/man/figures/maldipickr-data-flow-portrait.png)
+> Find a detailed version of the workflow diagram in [`man/figures/maldipickr-data-flow-portrait.png`](https://raw.githubusercontent.com/ClavelLab/maldipickr/main/man/figures/maldipickr-data-flow-portrait.png)
 
 ## Troubleshoot and Contribute
 
@@ -112,7 +112,7 @@ If you use our package, please consider citing our work:
 
 > Charlie Pauvert, David Wylensek, Selina Nüchtern, Thomas Clavel, maldipickr dereplicates microbial MALDI-TOF spectra to facilitate multiplexed isolation, _Bioinformatics Advances_, 2026; vbag171, https://doi.org/10.1093/bioadv/vbag171
 
-All the code for the analysis in the manuscript is available at [ClavelLab/maldipickr_manuscript](https://github.com/ClavelLab/maldipickr_manuscript) or at a CodeOcean capsule ([10.24433/CO.1202249.v2](https://doi.org/10.24433/CO.1202249.v2) using data at [zenodo.org/10.5281/zenodo.15744631](https://doi.org/10.5281/zenodo.15744631).
+All the code for the analysis in the manuscript is available at [ClavelLab/maldipickr_manuscript](https://github.com/ClavelLab/maldipickr_manuscript) or at a CodeOcean capsule ([10.24433/CO.1202249.v2](https://doi.org/10.24433/CO.1202249.v2)) using data at [zenodo.org/10.5281/zenodo.15744631](https://doi.org/10.5281/zenodo.15744631).
 
 ## Alternatives to maldipickr