nanopore-assembly/CITATION.cff at master · CarolinaPB/nanopore-assembly · GitHub

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# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: nanopore-assembly
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Carolina
    family-names: Pita Barros
    orcid: 'https://orcid.org/0000-0002-6755-0643'
repository-code: 'https://github.com/CarolinaPB/nanopore-assembly'
url: 'https://github.com/CarolinaPB/nanopore-assembly'
abstract: >-
  A pipeline for creating an assembly from nanopore reads.
  It creates an assembly, does scaffolding with long reads
  and polishing with short reads. It also does variant
  calling with short reads and with long reads separately.
  In addition, this pipeline computes busco scores before
  and after polishing. From this pipeline you’ll get
  statistics files with assembly statistics, as well as
  statistics from the variant calling VCFs. There’s an
  optional step to compute a whole genome alignment between
  the new assembly and one or more assemblies of your
  choice.
keywords:
  - nanopore
  - genome assembly
  - snakemake
license: MIT
commit: 2d90492
version: 0.1.1
date-released: '2022-03-01'