Merge branch 'master' into dev-pyshacl

Author: crisely09

.github/workflows/publish.yml

@@ -21,4 +21,4 @@ jobs:
         uses: pypa/gh-action-pypi-publish@master
         with:
           user: __token__
-          password: ${{ secrets.PYPI_API_TOKEN }}
+          password: ${{ secrets.PYPI_API_TOKEN }}

docs/source/releases/release-notes.rst

@@ -2,104 +2,50 @@
 Release Notes
 =============
 
-This release adds new features and enhancements to Nexus Forge as well as bug fixes.
-
-New Features
-============
-
-Resolving
----------
-
-* Added ontology resource resolving based on skos:prefLabel and skos:altLabel in addition to label and skos:notation. `#245 <https://github.com/BlueBrain/nexus-forge/pull/245>`__ (|Binder_Resolving| to try it)
-
-Modeling
---------
-
-* Add support for validation against a schema. `#217 <https://github.com/BlueBrain/nexus-forge/pull/217>`__ (|Binder_Modeling| to try it)
-
-.. code-block:: python
-
-    from kgforge.core import KnowledgeGraphForge
-    # see https://github.com/BlueBrain/nexus-forge/blob/master/examples/notebooks/use-cases/prod-forge-nexus.yml for a full forge config example.
-    forge = KnowledgeGraphForge(configuration="./config.yml", **kwargs)
-    person = Resource(type="Person", name="Jane Doe")
-    # By default the schema associated with the resource type is picked for validation. A different type can be set using the type_ argument.
-    forge.validate(person, type_="Agent")
+This release introduces new enhancements to Nexus Forge.
 
 
 Enhancements
 ============
 
-Querying
---------
-
-|Binder_Querying| to try the querying enhancements.
-
-* Added support for searching using filters (except when Paths syntax is used) from _store_metadata properties (i.e _createdAt, _updatedAt,...) `#224 <https://github.com/BlueBrain/nexus-forge/pull/224>`__ `#240 <https://github.com/BlueBrain/nexus-forge/pull/240>`__ (issue `#209 <https://github.com/BlueBrain/nexus-forge/pull/209>`__)
-* Added support for searching using datetime filters which can be specify as string suffixed with `^^xsd:dateTime` `#224 <https://github.com/BlueBrain/nexus-forge/pull/224>`__
-
-.. code-block:: python
+Storing
+-------
 
-    from kgforge.core import KnowledgeGraphForge
-    # see https://github.com/BlueBrain/nexus-forge/blob/master/examples/notebooks/use-cases/prod-forge-nexus.yml for a full forge config example.
-    forge = KnowledgeGraphForge(configuration="./config.yml", **kwargs)
-    filters = {
-           "type": "Dataset",
-           "_createdAt":'"2022-04-12T21:29:14.410Z"^^xsd:dateTime'
-          }
-    forge.search(filters)
+|Binder_Storing| to try the enhancements.
 
-
-* Added support for disabling SPARQL rewriting when a correct SPARQL is provided `#224 <https://github.com/BlueBrain/nexus-forge/pull/224>`__ (issue `#218 <https://github.com/BlueBrain/nexus-forge/pull/218>`__)
-* Inline query limit/offset arguments are now superseded by limit/offset provided as argument for `forge.search()` `#224 <https://github.com/BlueBrain/nexus-forge/pull/224>`__ (issue `#189 <https://github.com/BlueBrain/nexus-forge/pull/189>`__)
-* Added support for `IN` SPARQL clause when rewriting SPARQL queries in `forge.search()` `#240 <https://github.com/BlueBrain/nexus-forge/pull/240>`__ (issue `#242 <https://github.com/BlueBrain/nexus-forge/pull/242>`__)
-* Using filters as argument when calling `forge.search(*filters, **params)` now raises an exception `#240 <https://github.com/BlueBrain/nexus-forge/pull/240>`__
-* When using BlueBrainNexusStore, `forge.retrieve()` and `forge.search()` now get the `original registered JSON payload <https://bluebrainnexus.io/docs/delta/api/resources-api.html#fetch-original-payload>`__ to avoid any JSON transformation `#232 <https://github.com/BlueBrain/nexus-forge/pull/232>`__
-* `forge.search()` returns resources at the exact revision they are stored in the configured searchendpoint and no longer at the latest revision. As a consequence search results are no longer `_sychronized` `#232 <https://github.com/BlueBrain/nexus-forge/pull/232>`__
-* `_last_action` property is now added to resources obtained from `forge.retrieve()` `#232 <https://github.com/BlueBrain/nexus-forge/pull/232>`__
-* Added the property distribution.atLocation.store.type and distribution.atLocation.store.type._rev to BlueBrainNexusStore file metadata mapping file `#232 <https://github.com/BlueBrain/nexus-forge/pull/232>`__
-* When using BlueBrainNexusStore, it is possible to set (in the forge config file) GET params when calling `forge.retrieve() `#232 <https://github.com/BlueBrain/nexus-forge/pull/232>`__
-
-Converting
-----------
-
-|Binder_JSON-LD-IO| to try the JSON-LD enhancements.
-
-* `forge.as_jsonld(r, form="expanded")` now outputs expanded JSON-LD with @value added for literals. `#244 <https://github.com/BlueBrain/nexus-forge/pull/244>`__
-* `forge.as_jsonld(r, form="compacted")` keeps unchanged JSON null values and arrays. The param `array_as_set` is no longer needed and is thus removed along with the `na` argument `#244 <https://github.com/BlueBrain/nexus-forge/pull/244>`__
+* Synchronize nested resources of a given resources when calling `forge.register(resource)` `#269 <https://github.com/BlueBrain/nexus-forge/pull/269>`__ (issue `#211 <https://github.com/BlueBrain/nexus-forge/issues/211>`__)
 
 
 Resolving
 ---------
 
 |Binder_Resolving| to try the resolving enhancements.
 
-* Added `searchendpoints` config in the `forge config Resolvers section <https://github.com/BlueBrain/nexus-forge/blob/v0.7.1/examples/notebooks/use-cases/prod-forge-nexus.yml#L30>`__ `#226 <https://github.com/BlueBrain/nexus-forge/pull/226>`__
+* Added ResolvingStrategy.EXACT_CASEINSENSITIVE_MATCH as a new case-insensitive exact match resolving strategy `#275 <https://github.com/BlueBrain/nexus-forge/pull/275>`__ `#277 <https://github.com/BlueBrain/nexus-forge/pull/277>`__
 
 
-Bug Fixes
-=========
 
-* Added an identifier and the forge model configured JSON-LD context to resources obtained from an ElasticSearch query `#238 <https://github.com/BlueBrain/nexus-forge/pull/238>`__ (issue `#230 <https://github.com/BlueBrain/nexus-forge/pull/230>`__) (|Binder_Querying| to try it)
-* Fixed failing SPARQL query rewriting when a used JSON-LD context term does not have `@id` `#231 <https://github.com/BlueBrain/nexus-forge/pull/231>`__
+Formatting
+----------
+
+|Binder_Formatting| to try the enhancements.
+
+* Added a new identifier formatter for BBP Nexus Store deployment `#278 <https://github.com/BlueBrain/nexus-forge/pull/278>`__
+
 
 Changelog
 =========
 
-`Full changelog <https://github.com/BlueBrain/nexus-forge/compare/v0.7.0...v0.7.1>`__
+`Full changelog <https://github.com/BlueBrain/nexus-forge/compare/v0.7.1...v0.8.0>`__
 
 .. |Binder_Resolving| image:: https://mybinder.org/badge_logo.svg
     :alt: Binder_Querying
-    :target: https://mybinder.org/v2/gh/BlueBrain/nexus-forge/v0.7.1?filepath=examples%2Fnotebooks%2Fgetting-started%2F09%20-%20Resolving.ipynb
-
-.. |Binder_Modeling| image:: https://mybinder.org/badge_logo.svg
-    :alt: Binder_Modeling
-    :target: https://mybinder.org/v2/gh/BlueBrain/nexus-forge/v0.7.1?filepath=examples%2Fnotebooks%2Fgetting-started%2F09%20-%20Modeling.ipynb
+    :target: https://mybinder.org/v2/gh/BlueBrain/nexus-forge/v0.8.0?filepath=examples%2Fnotebooks%2Fgetting-started%2F09%20-%20Resolving.ipynb
 
-.. |Binder_JSON-LD-IO| image:: https://mybinder.org/badge_logo.svg
-    :alt: Binder_JSON-LD-IO
-    :target: https://mybinder.org/v2/gh/BlueBrain/nexus-forge/v0.7.1?filepath=examples%2Fnotebooks%2Fgetting-started%2F13%20-%20JSON-LD%20IO.ipynb
+.. |Binder_Storing| image:: https://mybinder.org/badge_logo.svg
+    :alt: Binder_Storing
+    :target: https://mybinder.org/v2/gh/BlueBrain/nexus-forge/v0.8.0?filepath=examples%2Fnotebooks%2Fgetting-started%2F03%20-%20Storing.ipynb
 
-.. |Binder_Querying| image:: https://mybinder.org/badge_logo.svg
-    :alt: Binder_Querying
-    :target: https://mybinder.org/v2/gh/BlueBrain/nexus-forge/v0.7.1?filepath=examples%2Fnotebooks%2Fgetting-started%2F04%20-%20Querying.ipynb
+.. |Binder_Formatting| image:: https://mybinder.org/badge_logo.svg
+    :alt: Binder_Formatting
+    :target: https://mybinder.org/v2/gh/BlueBrain/nexus-forge/v0.8.0?filepath=examples%2Fnotebooks%2Fgetting-started%2F08%20-%20Formatting.ipynb