More rosalind.info problems #10
Annotations
4 errors
|
build:
../../../.julia/packages/Documenter/iwb7N/src/utilities/utilities.jl#L44
failed to run `@example` block in src/rosalind/05-gc.md:176-178
```@example
records = parse_fasta(fake_file)
```
exception =
UndefVarError: `parse_fasta` not defined in `Main.__atexample__282`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ 05-gc.md:177
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/iwb7N/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/iwb7N/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/iwb7N/src/expander_pipeline.jl:801
|
|
build:
../../../.julia/packages/Documenter/iwb7N/src/utilities/utilities.jl#L44
failed to run `@example` block in src/rosalind/05-gc.md:217-220
```@example
seekstart(fake_file)
records = parse_fasta(fake_file)
```
exception =
UndefVarError: `fake_file` not defined in `Main.__atexample__283`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ 05-gc.md:218
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/iwb7N/src/expander_pipeline.jl:803 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/iwb7N/src/expander_pipeline.jl:802
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/iwb7N/src/expander_pipeline.jl:801
|
|
build:
../../../.julia/packages/Documenter/iwb7N/src/utilities/utilities.jl#L44
failed to run `@example` block in src/rosalind/05-gc.md:244-246
```@example gc
top_gc = records[i][1] # the first index gets the record, and the `[1]` gets the identifier
```
exception =
ArgumentError: invalid index: (0.6091954022988506, 3) of type Tuple{Float64, Int64}
Stacktrace:
[1] to_index(i::Tuple{Float64, Int64})
@ Base ./indices.jl:315
[2] to_index(A::Vector{Any}, i::Tuple{Float64, Int64})
@ Base ./indices.jl:292
[3] to_indices
@ ./indices.jl:368 [inlined]
[4] to_indices
@ ./indices.jl:360 [inlined]
[5] getindex(A::Vector{Any}, I::Tuple{Float64, Int64})
@ Base ./abstractarray.jl:1312
[6] top-level scope
@ 05-gc.md:245
[7] eval
@ ./boot.jl:430 [inlined]
[8] #60
@ ~/.julia/packages/Documenter/iwb7N/src/expander_pipeline.jl:803 [inlined]
[9] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[10] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/iwb7N/src/expander_pipeline.jl:802
[11] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[12] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[13] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[14] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[15] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/iwb7N/src/expander_pipeline.jl:801
|
|
build
Process completed with exit code 1.
|