Reproduce with:
import pandas as pd
from quilt3distribute import Dataset
t = pd.DataFrame([
{
"FOVId": 1,
"CellId": 1,
"FOVReadPath": "overview1.tiff",
"CellReadPath": "overview1cell1.tiff"
},
{
"FOVId": 1,
"CellId": 2,
"FOVReadPath": "overview1.tiff",
"CellReadPath": "overview1cell2.tiff"
},
{
"FOVId": 1,
"CellId": 3,
"FOVReadPath": "overview1.tiff",
"CellReadPath": "overview1cell3.tiff"
},
])
d = Dataset(
dataset=t,
name="single_cell_examples",
package_owner="jacksonb",
readme_path="README.md"
)
d.set_metadata_columns(["FOVId", "CellId"])
pkg = d.distribute()
Results in package:
(local Package)
└─README.md
└─CellReadPath/
└─28aa220b_overview1cell2.tiff
└─bd5f82f0_overview1cell3.tiff
└─e95c4684_overview1cell1.tiff
└─metadata.csv
└─FOVReadPath/
└─a194ec50_overview1.tiff
└─referenced_files/
└─example.csv
pkg["FOVReadPath"]["a194ec50_overview1.tiff"].meta returns:
{
"FOVId": 1,
"CellId": [1, 2, 3],
"associates": {
"FOVReadPath": "overview-images/a194ec50_overview1.tiff",
"CellReadPath": "cell-images/bd5f82f0_overview1cell3.tiff"
}
}
When it should return:
{
"FOVId": 1,
"CellId": [1, 2, 3],
"associates": {
"FOVReadPath": "overview-images/a194ec50_overview1.tiff",
"CellReadPath": [
"cell-images/e95c4684_overview1cell1.tiff",
"cell-images/28aa220b_overview1cell2.tiff",
"cell-images/bd5f82f0_overview1cell3.tiff"
]
}
}
Reproduce with:
Results in package:
pkg["FOVReadPath"]["a194ec50_overview1.tiff"].metareturns:{ "FOVId": 1, "CellId": [1, 2, 3], "associates": { "FOVReadPath": "overview-images/a194ec50_overview1.tiff", "CellReadPath": "cell-images/bd5f82f0_overview1cell3.tiff" } }When it should return:
{ "FOVId": 1, "CellId": [1, 2, 3], "associates": { "FOVReadPath": "overview-images/a194ec50_overview1.tiff", "CellReadPath": [ "cell-images/e95c4684_overview1cell1.tiff", "cell-images/28aa220b_overview1cell2.tiff", "cell-images/bd5f82f0_overview1cell3.tiff" ] } }